RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA315314", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA315314 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4208132 4208132 PRJNA315314_S_NODE_30184_length_154_cov_6.648000_g29863_i0 PRJNA315314 30184 154 6.648 10.23792 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 224 2.5299999999999994e-54   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g29863 i0 92.857 167.87012987013 154 11 100 0 1 154 1594938 1595091 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 25852 224 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
8034309 8034309 PRJNA315314_S_NODE_6747_length_311_cov_5.617021_g6426_i0 PRJNA315314 6747 311 5.617021 17.46893531 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 289 2.03e-73   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g6426 i0 85.263 235.980707395498 285 36 91 5 1 282 1595174 1595455 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 73390 289 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
13134533 13134533 PRJNA315314_S_NODE_21351_length_179_cov_5.280000_g21030_i0 PRJNA315314 21351 179 5.28 9.4512 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 176 8.62e-40   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g21030 i0 96.262 92.6927374301676 107 4 60 0 73 179 1595762 1595868 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 16592 176 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
23332665 23332665 PRJNA315314_S_NODE_11819_length_236_cov_8.666667_g11498_i0 PRJNA315314 11819 236 8.666667 20.45333412 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 329 8.73e-86   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g11498 i0 92.308 120.131355932203 234 15 99 2 3 236 1594734 1594964 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 28351 329 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;