RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA315314", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • CRuMs · 3 ✖

bioproject 1

  • PRJNA315314 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6758458 6758458 PRJNA315314_S_NODE_19706_length_186_cov_2.707006_g19385_i0 PRJNA315314 19706 186 2.707006 5.03503116 Mantamonas plastica 856889 Root_unresolved Root_unresolved 119 1.55e-22   NTclustered gi|300078493|gb|GU001155.1| 856889 g19385 i0 91.86 46.2795698924731 86 5 46 2 102 186 933 1017 Mantamonas plastica 28S ribosomal RNA gene, partial sequence blastn 8608 119 1 Eukaryota CRuMs         Mantamonadidae Mantamonas Mantamonas plastica
8033994 8033994 PRJNA315314_S_NODE_16227_length_203_cov_10.741379_g15906_i0 PRJNA315314 16227 203 10.741379 21.80499937 Diphylleia rotans 190327 Root_unresolved Root_unresolved 82.4 2.26e-11   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g15906 i0 87.324 25.8029556650246 71 9 35 0 1 71 44086 44156 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 5238 82.4 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
13134450 13134450 PRJNA315314_S_NODE_16511_length_202_cov_2.433526_g16190_i0 PRJNA315314 16511 202 2.433526 4.91572252 Diphylleia rotans 190327 Root_unresolved Root_unresolved 76.8 1.04e-9   NTclustered gi|1016881912|ref|NC_029886.1| 190327 g16190 i0 95.745 0.430693069306931 47 2 23 0 107 153 45288 45334 Diphylleia rotans isolate NIES-3764 mitochondrion, complete genome blastn 87 76.8 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;