RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA315314", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Peregrinibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA315314 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4207870 4207870 PRJNA315314_S_NODE_13684_length_220_cov_316.921466_g13363_i0 PRJNA315314 13684 220 316.921466 697.2272252 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 171 5.15e-38   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g13363 i0 83.684 528.359090909091 190 22 85 4 27 212 814170 813986 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 116239 171 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
18232282 18232282 PRJNA315314_S_NODE_1075_length_741_cov_84.654494_g858_i0 PRJNA315314 1075 741 84.654494 627.28980054 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 294 1.12e-74   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g858 i0 83.133 388.329284750337 332 46 73 8 19 348 813984 813661 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 287752 294 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
27944733 27944733 PRJNA315314_S_NODE_13125_length_225_cov_2.096939_g12804_i0 PRJNA315314 13125 225 2.096939 4.71811275 Bacteria 2 Bacteria Bacteria 100 1.54e-23   NR MCA9377508.1 2030811 g12804 i0 86.5 2.8 52 7 69.3 0 223 68 229 280 MCA9377508.1 50S ribosomal protein L2 [Candidatus Peregrinibacteria bacterium] diamond 630 101 0.99009900990099 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;