RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA315314", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Methylomirabilota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Methylomirabilota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA315314 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27358953 27358953 PRJNA315314_S_NODE_10923_length_245_cov_3.305556_g10602_i0 PRJNA315314 10923 245 3.305556 8.0986122 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 42.4 0.0473   NR HEV8306692.1 2072417 g10602 i0 51.3 0.477551020408163 39 19 47.8 0 193 77 166 204 HEV8306692.1 CoA-transferase [Candidatus Methylomirabilota bacterium] diamond 117 42.4 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
28165754 28165754 PRJNA315314_S_NODE_24225_length_170_cov_1.666667_g23904_i0 PRJNA315314 24225 170 1.666667 2.8333339 Bacteria 2 Bacteria Bacteria 43.9 0.00549   NR HTN72733.1 2072417 g23904 i0 80.8 2.84117647058824 26 5 45.9 0 92 169 1 26 HTN72733.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Candidatus Methylomirabilota bacterium] diamond 483 44.3 0.99097065462754 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
32224149 32224149 PRJNA315314_S_NODE_18638_length_191_cov_2.253086_g18317_i0 PRJNA315314 18638 191 2.253086 4.30339426 Candidatus Methylomirabilales bacterium 3159508 Bacteria Bacteria 52 1e-5   NR MFN3477275.1 3159508 g18317 i0 44.1 0.926701570680628 59 33 92.7 0 191 15 319 377 MFN3477275.1 O-antigen ligase family protein [Candidatus Methylomirabilales bacterium] diamond 177 52 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota Candidatus Methylomirabilia Candidatus Methylomirabilales     Candidatus Methylomirabilales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;