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contig_metadata

11 rows where bioproject = "PRJNA315314", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 11 ✖

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA315314 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
381082 381082 PRJNA315314_S_NODE_701_length_910_cov_11.082860_g542_i0 PRJNA315314 701 910 11.08286 100.854026 root 1 Root_unresolved Root_unresolved 181 1.4899999999999999e-53   NR ABD46602.1 5778 g542 i0 69.7 1.60879120879121 119 36 39.2 0 409 53 1 119 ABD46602.1 unknown, partial [Vermamoeba vermiformis] diamond 1464 182 0.994505494505495 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3615927 3615927 PRJNA315314_S_NODE_26383_length_163_cov_21.537313_g26062_i0 PRJNA315314 26383 163 21.537313 35.10582019 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 272 9.58e-69   NTclustered gi|54306228|gb|AY626163.1| 297386 g26062 i0 96.933 97.7055214723926 163 4 100 1 1 163 1494 1655 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 15926 274 0.992700729927007 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
5484183 5484183 PRJNA315314_S_NODE_14925_length_211_cov_31.043956_g14604_i0 PRJNA315314 14925 211 31.043956 65.50274716 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 359 9.749999999999999e-95   NTclustered gi|54306228|gb|AY626163.1| 297386 g14604 i0 97.156 61.3601895734597 211 6 100 0 1 211 154 364 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 12947 359 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
6168117 6168117 PRJNA315314_S_NODE_21845_length_177_cov_54.783784_g21524_i0 PRJNA315314 21845 177 54.783784 96.96729768 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 322 1.03e-83   NTclustered gi|54306228|gb|AY626163.1| 297386 g21524 i0 99.435 99.5480225988701 177 1 100 0 1 177 390 566 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 17620 322 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
11859509 11859509 PRJNA315314_S_NODE_23030_length_173_cov_51.423611_g22709_i0 PRJNA315314 23030 173 51.423611 88.96284703 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 307 2.81e-79   NTclustered gi|54306228|gb|AY626163.1| 297386 g22709 i0 98.837 100.173410404624 172 2 99 0 1 172 1117 946 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 17330 307 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
18232351 18232351 PRJNA315314_S_NODE_13915_length_219_cov_2.047368_g13594_i0 PRJNA315314 13915 219 2.047368 4.48373592 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 163 8.58e-36   NTclustered gi|292559443|ref|NC_013986.1| 5778 g13594 i0 84.024 53.4977168949772 169 27 77 0 1 169 39697 39865 Hartmannella vermiformis mitochondrion, complete genome blastn 11716 163 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19507105 19507105 PRJNA315314_S_NODE_956_length_789_cov_9.560526_g542_i1 PRJNA315314 956 789 9.560526 75.43255014 root 1 Root_unresolved Root_unresolved 181 2.8499999999999996e-54   NR ABD46602.1 5778 g542 i1 69.7 2.31939163498099 119 36 45.2 0 409 53 1 119 ABD46602.1 unknown, partial [Vermamoeba vermiformis] diamond 1830 182 0.994505494505495 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22057123 22057123 PRJNA315314_S_NODE_11918_length_235_cov_8.980583_g11597_i0 PRJNA315314 11918 235 8.980583 21.10437005 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 435 1.79e-117   NTclustered gi|399764168|gb|JQ271679.1| 1215977 g11597 i0 100 61.0127659574468 235 0 100 0 1 235 166 400 Copromyxa sp. PKD 2011 strain ZEB4 18S ribosomal RNA gene, partial sequence blastn 14338 435 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
22057268 22057268 PRJNA315314_S_NODE_1918_length_561_cov_14.924812_g1643_i0 PRJNA315314 1918 561 14.924812 83.72819532 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 254 1.41e-62   NTclustered gi|145386791|gb|EF216916.1| 136459 g1643 i0 77.433 27.4010695187166 483 72 85 23 84 561 1554 1104 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 15372 254 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
23333041 23333041 PRJNA315314_S_NODE_579_length_991_cov_51.143451_g441_i0 PRJNA315314 579 991 51.143451 506.83159941 Tubulinea group 04 sp. P18 1215998 Tubulinea other_Eukaryota 1814 0   NTclustered gi|399764278|gb|JQ271789.1| 1215998 g441 i0 99.697 32.1220988900101 991 3 100 0 1 991 20 1010 Tubulinea group 04 sp. P18 18S ribosomal RNA gene, partial sequence blastn 31833 1814 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. P18
24606734 24606734 PRJNA315314_S_NODE_1280_length_676_cov_29.165379_g1046_i0 PRJNA315314 1280 676 29.165379 197.15796204 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 357 1.28e-93   NTclustered gi|511487963|gb|JX898537.1| 1260765 g1046 i0 84.252 24.3668639053254 381 45 55 11 54 424 1 376 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 16472 357 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;