RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA314497" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA314497 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1655372 1655372 PRJNA314497_P_NODE_5142_length_150_cov_1.818182_g4990_i0 PRJNA314497 5142 150 1.818182 2.727273 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 278 1.85e-70   NTclustered gi|922689899|gb|CP012410.1| 712357 g4990 i0 100 1 150 0 100 0 1 150 688236 688087 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 150 278 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
20782101 20782101 PRJNA314497_P_NODE_1957_length_386_cov_1.086835_g1807_i0 PRJNA314497 1957 386 1.086835 4.1951831 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 303 9.21e-78   NTclustered gi|922689899|gb|CP012410.1| 712357 g1807 i0 98.824 1.1139896373057 170 2 69 0 217 386 687287 687118 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 430 303 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;