RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA312899", tax_phylum = "Promethearchaeota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Promethearchaeota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA312899 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27200512 27200512 PRJNA312899_P_NODE_91702_length_165_cov_0.879310_g91260_i0 PRJNA312899 91702 165 0.87931 1.4508615 Promethearchaeia archaeon 3067280 Archaea Archaea 47.8 2.13e-4   NR MEE9379619.1 3067280 g91260 i0 47.3 1.90909090909091 55 28 98.2 1 163 2 127 181 MEE9379619.1 PD-(D/E)XK nuclease-like domain-containing protein [Promethearchaeia archaeon] diamond 315 47.8 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia       Promethearchaeia archaeon
32034229 32034229 PRJNA312899_P_NODE_80818_length_177_cov_1.593750_g80376_i0 PRJNA312899 80818 177 1.59375 2.8209375 Promethearchaeia archaeon 3067280 Archaea Archaea 74.7 8.05e-14   NR MFO7795213.1 3067280 g80376 i0 94.7 0.644067796610169 38 2 64.4 0 115 2 334 371 MFO7795213.1 reverse transcriptase family protein [Promethearchaeia archaeon] diamond 114 74.7 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia       Promethearchaeia archaeon
32287611 32287611 PRJNA312899_P_NODE_26579_length_361_cov_26.942308_g26137_i0 PRJNA312899 26579 361 26.942308 97.26173188 Promethearchaeia archaeon 3067280 Archaea Archaea 223 5.85e-65   NR MFO7795213.1 3067280 g26137 i0 92.5 0.997229916897507 120 9 99.7 0 360 1 598 717 MFO7795213.1 reverse transcriptase family protein [Promethearchaeia archaeon] diamond 360 223 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia       Promethearchaeia archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;