RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA312899", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 8 ✖

tax_kingdom 1

  • Metazoa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA312899 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
380337 380337 PRJNA312899_P_NODE_8721_length_638_cov_76.110357_g8333_i0 PRJNA312899 8721 638 76.110357 485.58407766 Stenostomum sthenum 1611831 Platyhelminthes Platyhelminthes 1079 0   NTclustered gi|1215837197|ref|NC_035256.1| 1611831 g8333 i0 97.323 32.91065830721 635 17 99 0 1 635 8346 8980 Stenostomum sthenum mitochondrion, complete genome blastn 20997 1079 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sthenum
17642474 17642474 PRJNA312899_P_NODE_63214_length_210_cov_1.552795_g62772_i0 PRJNA312899 63214 210 1.552795 3.2608695 Stenostomum 39238 Platyhelminthes Platyhelminthes 383 5.75e-102   NTclustered gi|209968707|gb|FJ384870.1| 52061 g62772 i0 99.524 25.652380952381 210 1 100 0 1 210 759 550 Stenostomum leucops isolate K05_55 28S ribosomal RNA gene, partial sequence blastn 5387 383 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
20190863 20190863 PRJNA312899_P_NODE_59276_length_220_cov_1.192982_g58834_i0 PRJNA312899 59276 220 1.192982 2.6245604 root 1 Root_unresolved Root_unresolved 399 6.039999999999999e-107   NTclustered gi|60597293|gb|AY809307.1| 6182 g58834 i0 100 89.4272727272727 216 0 98 0 5 220 400 185 Schistosoma japonicum SJCHGC07711 protein mRNA, partial cds blastn 19674 399 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
22055792 22055792 PRJNA312899_P_NODE_27658_length_353_cov_15.414474_g27216_i0 PRJNA312899 27658 353 15.414474 54.41309322 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.033   NTclustered gi|687551389|emb|LK630385.1| 57078 g27216 i0 100 0.0793201133144476 28 0 8 0 68 95 323 296 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0215510 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
28432362 28432362 PRJNA312899_P_NODE_67966_length_198_cov_2.107383_g67524_i0 PRJNA312899 67966 198 2.107383 4.17261834 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 88.6 1.31e-18   NR PAA84227.1 282301 g67524 i0 66.2 1.96969696969697 65 22 98.5 0 2 196 412 476 PAA84227.1 hypothetical protein BOX15_Mlig011061g1, partial [Macrostomum lignano] diamond 390 88.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
30818545 30818545 PRJNA312899_P_NODE_74514_length_186_cov_3.569343_g74072_i0 PRJNA312899 74514 186 3.569343 6.63897798 Metazoa 33208 Platyhelminthes Platyhelminthes 60.5 9.51e-9   NR XP_051074928.1 6185 g74072 i0 51.9 4.08064516129032 52 25 83.9 0 29 184 403 454 XP_051074928.1 Heat shock protein [Schistosoma haematobium] diamond 759 60.8 0.995065789473684 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium
31464988 31464988 PRJNA312899_P_NODE_42496_length_272_cov_4.547085_g42054_i0 PRJNA312899 42496 272 4.547085 12.3680712 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 49.7 1.93e-4   NR PAA48956.1 282301 g42054 i0 37.5 4.23529411764706 64 37 67.3 1 3 185 772 835 PAA48956.1 hypothetical protein BOX15_Mlig017056g1 [Macrostomum lignano] diamond 1152 49.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
32746937 32746937 PRJNA312899_P_NODE_83860_length_171_cov_1.672131_g83418_i0 PRJNA312899 83860 171 1.672131 2.85934401 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 50.4 2.67e-5   NR VDD75186.1 53468 g83418 i0 57.5 4 40 17 70.2 0 122 3 213 252 VDD75186.1 unnamed protein product [Mesocestoides corti] diamond 684 50.8 0.992125984251969 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Mesocestoididae Mesocestoides Mesocestoides corti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;