RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA312899", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA312899 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15681859 15681859 PRJNA312899_P_NODE_18393_length_440_cov_7.271100_g17952_i0 PRJNA312899 18393 440 7.2711 31.99284 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 181 1.02e-50   NR SPQ93876.1 37360 g17952 i0 61.1 0.981818181818182 144 56 98.2 0 3 434 442 585 SPQ93876.1 unnamed protein product [Plasmodiophora brassicae] diamond 432 181 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32287613 32287613 PRJNA312899_P_NODE_31339_length_328_cov_12.598566_g30897_i0 PRJNA312899 31339 328 12.598566 41.32329648 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 60.5 3.23e-9   NR CEP02593.1 37360 g30897 i0 64.4 0.411585365853659 45 16 41.2 0 322 188 58 102 CEP02593.1 hypothetical protein PBRA_002561 [Plasmodiophora brassicae] diamond 135 60.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32477341 32477341 PRJNA312899_P_NODE_9479_length_614_cov_7.421239_g9083_i0 PRJNA312899 9479 614 7.421239 45.56640746 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 87.4 5.6e-16   NR SPR02116.1 37360 g9083 i0 34 1.28501628664495 144 91 69.4 3 21 446 3998 4139 SPR02116.1 unnamed protein product [Plasmodiophora brassicae] diamond 789 87.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;