RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA312899", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA312899 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26979343 26979343 PRJNA312899_P_NODE_64642_length_206_cov_3.197452_g64200_i0 PRJNA312899 64642 206 3.197452 6.58675112 Victivallaceae bacterium 2793042 Bacteria Bacteria 42.7 0.0234   NR MFA6104933.1 2793042 g64200 i0 40.4 0.830097087378641 57 28 80.1 2 1 165 833 885 MFA6104933.1 glycoside hydrolase domain-containing protein [Victivallaceae bacterium] diamond 171 42.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
31717812 31717812 PRJNA312899_P_NODE_34357_length_310_cov_24.915709_g33915_i0 PRJNA312899 34357 310 24.915709 77.2386979 Lentisphaeria bacterium 2053569 Bacteria Bacteria 45.1 0.0133   NR MDP6449742.1 2053569 g33915 i0 35.3 1.30645161290323 68 41 63.9 2 29 226 1619 1685 MDP6449742.1 hypothetical protein [Lentisphaeria bacterium] diamond 405 45.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;