RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA312899", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA312899 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24606355 24606355 PRJNA312899_P_NODE_8480_length_647_cov_30.023411_g8096_i0 PRJNA312899 8480 647 30.023411 194.25146917 Methanobacterium spitsbergense 2874285 Archaea Archaea 192 2.6699999999999992e-55   NR WP_223792203.1 2874285 g8096 i0 55.3 0.829984544049459 179 78 83 1 646 110 226 402 WP_223792203.1 phage integrase N-terminal SAM-like domain-containing protein [Methanobacterium spitsbergense] diamond 537 192 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium spitsbergense
30548199 30548199 PRJNA312899_P_NODE_76733_length_184_cov_1.133333_g76291_i0 PRJNA312899 76733 184 1.133333 2.08533272 Methanosphaera sp. WGK6 1561964 Archaea Archaea 64.3 3.83e-10   NR WP_084790347.1 1561964 g76291 i0 51.8 0.91304347826087 56 27 91.3 0 3 170 33 88 WP_084790347.1 metallophosphoesterase family protein [Methanosphaera sp. WGK6] diamond 168 64.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. WGK6
31798380 31798380 PRJNA312899_P_NODE_31317_length_328_cov_16.634409_g30875_i0 PRJNA312899 31317 328 16.634409 54.56086152 root 1 Root_unresolved Root_unresolved 96.3 7.290000000000001e-22   NR MEN6290519.1 2164 g30875 i0 53 2.35060975609756 83 36 73.2 1 2 241 109 191 MEN6290519.1 hypothetical protein [Methanobacterium sp.] diamond 771 96.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;