RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA312899", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA312899 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18231198 18231198 PRJNA312899_P_NODE_39315_length_285_cov_10.368644_g38873_i0 PRJNA312899 39315 285 10.368644 29.5506354 Ignavibacteria bacterium 2053306 Bacteria Bacteria 93.6 3.1200000000000004e-21   NR MDR0926539.1 2053306 g38873 i0 70.7 1.21052631578947 58 17 61.1 0 111 284 1 58 MDR0926539.1 CoA transferase subunit A [Ignavibacteria bacterium] diamond 345 93.6 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
28369109 28369109 PRJNA312899_P_NODE_81206_length_176_cov_2.409449_g80764_i0 PRJNA312899 81206 176 2.409449 4.24063024 Ignavibacteria bacterium 2053306 Bacteria Bacteria 82.8 1.15e-16   NR MBK8553627.1 2053306 g80764 i0 65.5 0.988636363636364 58 20 98.9 0 176 3 722 779 MBK8553627.1 HEAT repeat domain-containing protein [Ignavibacteria bacterium] diamond 174 82.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30628724 30628724 PRJNA312899_P_NODE_24353_length_379_cov_39.248485_g23911_i0 PRJNA312899 24353 379 39.248485 148.75175815 Pseudomonadati 3379134 Bacteria Bacteria 85.1 1.24e-17   NR OYV84594.1 1970532 g23911 i0 44 4.5910290237467 100 56 79.2 0 345 46 1 100 OYV84594.1 MAG: MFS transporter, partial [Ignavibacteriae bacterium 37-53-5] diamond 1740 85.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriae bacterium 37-53-5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;