RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA312899", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA312899 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4893022 4893022 PRJNA312899_P_NODE_98604_length_162_cov_1.353982_g98162_i0 PRJNA312899 98604 162 1.353982 2.19345084 Chlorobiaceae 191412 Bacteria Bacteria 93.5 7.94e-15   NTclustered gi|1746300117|gb|CP041698.1| 1094 g98162 i0 88.312 0.950617283950617 77 9 48 0 41 117 1718921 1718997 Chlorobium phaeovibrioides strain PhvTcv-s14 chromosome, complete genome blastn 154 93.5 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides
31608859 31608859 PRJNA312899_P_NODE_63156_length_210_cov_1.900621_g62714_i0 PRJNA312899 63156 210 1.900621 3.9913041 Bacteria 2 Bacteria Bacteria 55.1 9.98e-7   NR KXK57101.1 1619898 g62714 i0 37.3 2.9 67 42 95.7 0 209 9 244 310 KXK57101.1 MAG: Peptidase family M3 [Chlorobi bacterium OLB7] diamond 609 55.1 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium OLB7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;