RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA312899", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA312899 · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
378975 378975 PRJNA312899_P_NODE_12681_length_531_cov_9.251037_g12252_i0 PRJNA312899 12681 531 9.251037 49.12300647 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 161 1.1599999999999999e-42   NR XP_013754039.1 461836 g12252 i0 49.1 3.81920903954802 169 85 94.9 1 524 21 362 530 XP_013754039.1 proline dehydrogenase 1 [Thecamonas trahens ATCC 50062] diamond 2028 161 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
379230 379230 PRJNA312899_P_NODE_24441_length_379_cov_2.639394_g23999_i0 PRJNA312899 24441 379 2.639394 10.00330326 Thecamonas trahens 529818 Root_unresolved Root_unresolved 76.8 2.14e-9   NTclustered gi|923124841|ref|XM_013900435.1| 461836 g23999 i0 89.831 0.419525065963061 59 6 16 0 321 379 527 469 Thecamonas trahens ATCC 50062 GTP-binding nuclear protein Ran (AMSG_07838), mRNA blastn 159 76.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27927122 27927122 PRJNA312899_P_NODE_1885_length_1155_cov_4.522604_g1706_i0 PRJNA312899 1885 1155 4.522604 52.2360762 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 169 4.959999999999998e-42   NR XP_013762411.1 461836 g1706 i0 34.9 0.966233766233766 372 199 92.2 12 1153 89 642 987 XP_013762411.1 uncharacterized protein AMSG_00680 [Thecamonas trahens ATCC 50062] diamond 1116 169 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29537339 29537339 PRJNA312899_P_NODE_250_length_2199_cov_10.901395_g228_i0 PRJNA312899 250 2199 10.901395 239.72167605 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 71.2 1.18e-8   NR XP_013759461.1 461836 g228 i0 26.9 0.294679399727149 216 139 28.2 6 973 1593 232 437 XP_013759461.1 uncharacterized protein AMSG_02549 [Thecamonas trahens ATCC 50062] diamond 648 71.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30168883 30168883 PRJNA312899_P_NODE_7232_length_692_cov_8.884914_g6872_i0 PRJNA312899 7232 692 8.884914 61.48360488 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 101 1.08e-20   NR XP_013760781.1 461836 g6872 i0 55.8 0.372832369942197 86 38 37.3 0 691 434 255 340 XP_013760781.1 uncharacterized protein AMSG_02228 [Thecamonas trahens ATCC 50062] diamond 258 101 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30453697 30453697 PRJNA312899_P_NODE_80133_length_178_cov_1.581395_g79691_i0 PRJNA312899 80133 178 1.581395 2.8148831 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 54.7 8.54e-7   NR XP_013757029.1 461836 g79691 i0 40.7 0.910112359550562 54 32 91 0 169 8 18 71 XP_013757029.1 uncharacterized protein AMSG_06337 [Thecamonas trahens ATCC 50062] diamond 162 54.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;