RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA312615" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA312615 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24604161 24604161 PRJNA312615_P_NODE_28460_length_229_cov_1.894444_g28309_i0 PRJNA312615 28460 229 1.894444 4.33827676 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 137 5.86e-36   NR ETO30355.1 46433 g28309 i0 78.7 1.95196506550218 75 16 98.3 0 3 227 192 266 ETO30355.1 hypothetical protein RFI_06765, partial [Reticulomyxa filosa] diamond 447 137 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
24604211 24604211 PRJNA312615_P_NODE_3080_length_656_cov_1.835255_g2946_i0 PRJNA312615 3080 656 1.835255 12.039272800000001 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 254 2.8e-76   NR ETO10415.1 46433 g2946 i0 72.1 1.73323170731707 190 47 86.9 2 2 571 592 775 ETO10415.1 inorganic pyrophosphatase [Reticulomyxa filosa] diamond 1137 254 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27958664 27958664 PRJNA312615_P_NODE_26785_length_236_cov_1.631016_g26634_i0 PRJNA312615 26785 236 1.631016 3.84919776 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 72 1.67e-12   NR ETO22614.1 46433 g26634 i0 44.6 1.90677966101695 74 41 94.1 0 235 14 1038 1111 ETO22614.1 hypothetical protein RFI_14580 [Reticulomyxa filosa] diamond 450 72 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28274309 28274309 PRJNA312615_P_NODE_54306_length_165_cov_0.879310_g54155_i0 PRJNA312615 54306 165 0.87931 1.4508615 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.013   NR ETO16240.1 46433 g54155 i0 43.9 2.43636363636364 41 23 74.5 0 146 24 1052 1092 ETO16240.1 ubiquitin domain-containing protein, partial [Reticulomyxa filosa] diamond 402 42.7 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29617725 29617725 PRJNA312615_P_NODE_26610_length_237_cov_1.085106_g26459_i0 PRJNA312615 26610 237 1.085106 2.57170122 root 1 Root_unresolved Root_unresolved 94 8.97e-21   NR ETO32667.1 46433 g26459 i0 57.7 4.9746835443038 78 33 98.7 0 3 236 148 225 ETO32667.1 hypothetical protein RFI_04449 [Reticulomyxa filosa] diamond 1179 94 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;