RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA312615" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA312615 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
378178 378178 PRJNA312615_P_NODE_31701_length_217_cov_1.791667_g31550_i0 PRJNA312615 31701 217 1.791667 3.88791739 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87 3.35e-19   NR XP_004341067.1 1257118 g31550 i0 74.5 2.88940092165899 51 13 70.5 0 216 64 148 198 XP_004341067.1 peptidylprolyl cis-trans isomerase, cyclophilin-type, putative [Acanthamoeba castellanii str. Neff] diamond 627 87 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14407343 14407343 PRJNA312615_P_NODE_43312_length_186_cov_1.102190_g43161_i0 PRJNA312615 43312 186 1.10219 2.0500734 Vexilliferidae sp. 107MAR 338730 Discosea other_Eukaryota 141 3.299999999999999e-29   NTclustered gi|73623529|gb|DQ087330.1| 338730 g43161 i0 81.183 36.5698924731183 186 25 100 6 1 186 190 15 Vexilliferidae sp. 107MAR 18S ribosomal RNA gene, partial sequence blastn 6802 141 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae   Vexilliferidae sp. 107MAR
19503970 19503970 PRJNA312615_P_NODE_23036_length_254_cov_1.458537_g22885_i0 PRJNA312615 23036 254 1.458537 3.70468398 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 62.8 3.63e-9   NR XP_004334520.1 1257118 g22885 i0 60.7 0.661417322834646 56 15 63.8 2 164 3 31 81 XP_004334520.1 CMF receptor CMFR1, putative [Acanthamoeba castellanii str. Neff] diamond 168 62.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22055266 22055266 PRJNA312615_P_NODE_5898_length_500_cov_4.037694_g5750_i0 PRJNA312615 5898 500 4.037694 20.18847 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 283 1.59e-71   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g5750 i0 84.859 24.266 284 39 56 4 109 390 21 302 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 12133 283 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27105702 27105702 PRJNA312615_P_NODE_762_length_1089_cov_4.362500_g678_i0 PRJNA312615 762 1089 4.3625 47.507625 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 288 6.75e-93   NR XP_004367664.1 1257118 g678 i0 52.7 0.705234159779614 256 116 69.4 3 19 774 12 266 XP_004367664.1 phytanoylCoA dioxygenase [Acanthamoeba castellanii str. Neff] diamond 768 288 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27295521 27295521 PRJNA312615_P_NODE_23203_length_253_cov_1.617647_g23052_i0 PRJNA312615 23203 253 1.617647 4.09264691 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 73.6 5.98e-13   NR XP_004337827.1 1257118 g23052 i0 53.2 0.936758893280632 79 35 92.5 2 241 8 595 672 XP_004337827.1 acylCoA synthetase, putative [Acanthamoeba castellanii str. Neff] diamond 237 73.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27358899 27358899 PRJNA312615_P_NODE_20803_length_267_cov_1.811927_g20652_i0 PRJNA312615 20803 267 1.811927 4.83784509 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 122 1.52e-30   NR XP_004334520.1 1257118 g20652 i0 61.8 1 89 34 100 0 267 1 274 362 XP_004334520.1 CMF receptor CMFR1, putative [Acanthamoeba castellanii str. Neff] diamond 267 122 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;