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contig_metadata

24 rows where bioproject = "PRJNA312615", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 24 ✖

tax_phylum 1

  • Bdellovibrionota · 24 ✖

tax_kingdom 1

bioproject 1

  • PRJNA312615 · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
378284 378284 PRJNA312615_P_NODE_36961_length_202_cov_1.333333_g36810_i0 PRJNA312615 36961 202 1.333333 2.69333266 Bacteriovorax stolpii 960 Bacteria Bacteria 189 1.28e-43   NTclustered gi|1700689994|gb|CP030035.1| 960 g36810 i0 83.838 7.1980198019802 198 32 98 0 5 202 3573992 3574189 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 1454 189 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
4891945 4891945 PRJNA312615_P_NODE_5084_length_534_cov_6.476289_g4937_i0 PRJNA312615 5084 534 6.476289 34.58338326 Bacteriovorax 146784 Bacteria Bacteria 752 0   NTclustered gi|1700689994|gb|CP030035.1| 960 g4937 i0 92.135 540.574906367041 534 40 99 2 2 534 1662139 1661607 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 288667 752 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
10582223 10582223 PRJNA312615_P_NODE_35869_length_205_cov_1.288462_g35718_i0 PRJNA312615 35869 205 1.288462 2.6413471 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 148 2.22e-31   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g35718 i0 79.902 2.41951219512195 204 39 99 2 3 205 3704428 3704630 Bacteriovorax sp. HI3 DNA, complete genome blastn 496 148 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3
16955723 16955723 PRJNA312615_P_NODE_38534_length_198_cov_1.020134_g38383_i0 PRJNA312615 38534 198 1.020134 2.01986532 Bacteriovorax 146784 Bacteria Bacteria 114 9.83e-28   NR WP_102244582.1 960 g38383 i0 86.2 1.96969696969697 65 9 98.5 0 196 2 357 421 WP_102244582.1 sigma 54-interacting transcriptional regulator [Bacteriovorax stolpii] diamond 390 114 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
23330290 23330290 PRJNA312615_P_NODE_34559_length_208_cov_3.194969_g34408_i0 PRJNA312615 34559 208 3.194969 6.64553552 Bacteriovorax stolpii 960 Bacteria Bacteria 224 3.65e-54   NTclustered gi|1700689994|gb|CP030035.1| 960 g34408 i0 86.256 10.0240384615385 211 23 99 5 2 208 164709 164917 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 2085 224 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
24604326 24604326 PRJNA312615_P_NODE_36980_length_202_cov_1.267974_g36829_i0 PRJNA312615 36980 202 1.267974 2.56130748 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 169 1.67e-37   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g36829 i0 82 4.25742574257426 200 34 99 2 4 202 3699101 3698903 Bacteriovorax sp. HI3 DNA, complete genome blastn 860 169 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3
26884598 26884598 PRJNA312615_P_NODE_59261_length_152_cov_2.019417_g59110_i0 PRJNA312615 59261 152 2.019417 3.06951384 Oligoflexia bacterium 2599941 Bacteria Bacteria 62.4 2.6200000000000003e-10   NR MCM2323359.1 2599941 g59110 i0 56 0.986842105263158 50 22 98.7 0 3 152 25 74 MCM2323359.1 sigma-70 family RNA polymerase sigma factor [Oligoflexia bacterium] diamond 150 62.4 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
26916067 26916067 PRJNA312615_P_NODE_8842_length_415_cov_1.672131_g8692_i0 PRJNA312615 8842 415 1.672131 6.93934365 Bacteriovorax sp. 2608087 Bacteria Bacteria 95.5 6.53e-23   NR MBP9679997.1 2608087 g8692 i0 77.4 1.35180722891566 62 14 44.8 0 200 15 1 62 MBP9679997.1 hypothetical protein [Bacteriovorax sp.] diamond 561 95.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
27200462 27200462 PRJNA312615_P_NODE_39522_length_195_cov_1.397260_g39371_i0 PRJNA312615 39522 195 1.39726 2.724657 Bacteriovorax antarcticus 3088717 Bacteria Bacteria 59.3 8.01e-9   NR WP_323576164.1 3088717 g39371 i0 65.9 1.26153846153846 41 11 63.1 1 195 73 141 178 WP_323576164.1 preQ(1) synthase [Bacteriovorax antarcticus] diamond 246 59.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax antarcticus
27344915 27344915 PRJNA312615_P_NODE_41063_length_191_cov_1.436620_g40912_i0 PRJNA312615 41063 191 1.43662 2.7439442 Bacteriovoracales 2024979 Bacteria Bacteria 68.9 9.58e-14   NR WP_127718324.1 2234000 g40912 i0 75.6 2.76439790575916 45 11 70.7 0 189 55 16 60 WP_127718324.1 50S ribosomal protein L30 [Halobacteriovorax sp. HLS] diamond 528 68.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp. HLS
27485076 27485076 PRJNA312615_P_NODE_12983_length_343_cov_1.037415_g12833_i0 PRJNA312615 12983 343 1.037415 3.55833345 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 52.4 4.94e-5   NR MFP5384782.1 3058048 g12833 i0 40.9 0.577259475218659 66 37 57.7 1 341 144 550 613 MFP5384782.1 ATP-binding cassette domain-containing protein [Bacteriovoracia bacterium] diamond 198 52.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
27786970 27786970 PRJNA312615_P_NODE_32864_length_213_cov_2.487805_g32713_i0 PRJNA312615 32864 213 2.487805 5.29902465 Bdellovibrio 958 Bacteria Bacteria 91.3 1.06e-19   NR MBC7420993.1 28201 g32713 i0 78.6 5.49295774647887 56 12 78.9 0 213 46 324 379 MBC7420993.1 cystathionine gamma-synthase [Bdellovibrio sp.] diamond 1170 91.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
27927113 27927113 PRJNA312615_P_NODE_50085_length_169_cov_0.866667_g49934_i0 PRJNA312615 50085 169 0.866667 1.46466723 uncultured Bdellovibrio sp. 239744 Bacteria Bacteria 42 0.0268   NR WP_295904427.1 239744 g49934 i0 45.5 0.781065088757396 44 24 78.1 0 26 157 707 750 WP_295904427.1 Calx-beta domain-containing protein [uncultured Bdellovibrio sp.] diamond 132 42 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio uncultured Bdellovibrio sp.
29239276 29239276 PRJNA312615_P_NODE_52669_length_166_cov_0.888889_g52518_i0 PRJNA312615 52669 166 0.888889 1.47555574 Pseudomonadati 3379134 Bacteria Bacteria 88.6 8.53e-19   NR OFZ22860.1 1797386 g52518 i0 74.1 5.78313253012048 54 14 97.6 0 3 164 79 132 OFZ22860.1 MAG: hypothetical protein A2X94_17550 [Bdellovibrionales bacterium GWB1_55_8] diamond 960 88.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium GWB1_55_8
29252963 29252963 PRJNA312615_P_NODE_41869_length_189_cov_1.457143_g41718_i0 PRJNA312615 41869 189 1.457143 2.75400027 Bacteriovorax sp. 2608087 Bacteria Bacteria 67.8 5.35e-13   NR MBC7538171.1 2608087 g41718 i0 72.4 1.82539682539683 58 13 92.1 1 15 188 26 80 MBC7538171.1 hypothetical protein [Bacteriovorax sp.] diamond 345 67.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
29252964 29252964 PRJNA312615_P_NODE_47189_length_176_cov_1.204724_g47038_i0 PRJNA312615 47189 176 1.204724 2.12031424 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 60.5 3.05e-9   NR MBX9767865.1 2053517 g47038 i0 44.8 0.988636363636364 58 32 98.9 0 174 1 55 112 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 174 60.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29979471 29979471 PRJNA312615_P_NODE_50671_length_168_cov_0.873950_g50520_i0 PRJNA312615 50671 168 0.87395 1.468236 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 49.3 6.52e-5   NR MBL7665006.1 2081706 g50520 i0 50 0.928571428571429 52 25 91.1 1 5 157 1126 1177 MBL7665006.1 AAA family ATPase [Bacteriovoracaceae bacterium] diamond 156 49.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
30218137 30218137 PRJNA312615_P_NODE_20092_length_272_cov_1.143498_g19941_i0 PRJNA312615 20092 272 1.143498 3.11031456 Bacteriovorax 146784 Bacteria Bacteria 112 1.14e-28   NR WP_102245262.1 960 g19941 i0 86.6 1.47794117647059 67 9 73.9 0 4 204 134 200 WP_102245262.1 30S ribosomal protein S5 [Bacteriovorax stolpii] diamond 402 113 0.991150442477876 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
30642813 30642813 PRJNA312615_P_NODE_15313_length_314_cov_1.913208_g15162_i0 PRJNA312615 15313 314 1.913208 6.00747312 Bacteriovorax stolpii 960 Bacteria Bacteria 124 2.24e-34   NR WP_102245269.1 960 g15162 i0 86.1 0.687898089171974 72 10 68.8 0 98 313 1 72 WP_102245269.1 50S ribosomal protein L14 [Bacteriovorax stolpii] diamond 216 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
30706054 30706054 PRJNA312615_P_NODE_49194_length_170_cov_2.504132_g49043_i0 PRJNA312615 49194 170 2.504132 4.2570244 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 87.8 1.21e-18   NR MBX3020441.1 2053517 g49043 i0 62.5 0.988235294117647 56 21 98.8 0 1 168 240 295 MBX3020441.1 radical SAM family heme chaperone HemW [Bdellovibrionales bacterium] diamond 168 87.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31686019 31686019 PRJNA312615_P_NODE_45437_length_180_cov_2.320611_g45286_i0 PRJNA312615 45437 180 2.320611 4.1770998 Bacteriovorax sp. 2608087 Bacteria Bacteria 113 3.3e-31   NR MBP9681000.1 2608087 g45286 i0 92.9 0.933333333333333 56 4 93.3 0 4 171 13 68 MBP9681000.1 50S ribosomal protein L31 [Bacteriovorax sp.] diamond 168 113 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
31907544 31907544 PRJNA312615_P_NODE_19097_length_279_cov_1.326087_g18946_i0 PRJNA312615 19097 279 1.326087 3.69978273 Bacteriovorax sp. 2608087 Bacteria Bacteria 169 9.829999999999998e-47   NR MBC7540310.1 2608087 g18946 i0 81.1 0.967741935483871 90 17 96.8 0 3 272 573 662 MBC7540310.1 outer membrane protein assembly factor BamA [Bacteriovorax sp.] diamond 270 169 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
32065677 32065677 PRJNA312615_P_NODE_24718_length_246_cov_1.035533_g24567_i0 PRJNA312615 24718 246 1.035533 2.54741118 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 119 3.13e-29   NR MCK6594758.1 2081706 g24567 i0 65.9 2 82 28 100 0 246 1 142 223 MCK6594758.1 elongation factor G [Bacteriovoracaceae bacterium] diamond 492 119 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32097374 32097374 PRJNA312615_P_NODE_58078_length_162_cov_0.902655_g57927_i0 PRJNA312615 58078 162 0.902655 1.4623011 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 70.5 1.98e-12   NR HEY8278636.1 3034175 g57927 i0 79.2 0.981481481481482 53 11 98.1 0 3 161 420 472 HEY8278636.1 NFACT RNA binding domain-containing protein [Bdellovibrionota bacterium] diamond 159 70.5 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;