RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA312615" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA312615 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2339213 2339213 PRJNA312615_P_NODE_39582_length_195_cov_1.273973_g39431_i0 PRJNA312615 39582 195 1.273973 2.48424735 Deinococcus 1298 Bacteria Bacteria 350 5.34e-92   NTclustered gi|1220362168|gb|CP021081.1| 317577 g39431 i0 98.98 198.594871794872 196 0 100 2 1 195 2341747 2341553 Deinococcus ficus strain CC-FR2-10, complete genome blastn 38726 350 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
4891629 4891629 PRJNA312615_P_NODE_22544_length_257_cov_1.048077_g22393_i0 PRJNA312615 22544 257 1.048077 2.69355789 root 1 Root_unresolved Root_unresolved 436 5.52e-118   NTclustered gi|145033|gb|M21413.1|DEIRGDA 1299 g22393 i0 97.287 132.821011673152 258 5 100 2 1 257 850 594 D.radiodurans 16S ribosomal RNA gene blastn 34135 436 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
11857217 11857217 PRJNA312615_P_NODE_49710_length_169_cov_1.616667_g49559_i0 PRJNA312615 49710 169 1.616667 2.73216723 Thermus thermophilus 274 Bacteria Bacteria 217 4.73e-52   NTclustered gi|2074862630|dbj|AP024931.1| 274 g49559 i0 91.358 7.1715976331360904 162 8 93 4 1 157 148926 149086 Thermus thermophilus AA2-2 plasmid pAA2-2c DNA, complete sequence blastn 1212 217 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus
14407643 14407643 PRJNA312615_P_NODE_59132_length_153_cov_2.644231_g58981_i0 PRJNA312615 59132 153 2.644231 4.04567343 Thermus parvatiensis 456163 Bacteria Bacteria 244 1.93e-60   NTclustered gi|982539283|gb|CP014141.1| 456163 g58981 i0 95.425 38.6928104575163 153 7 100 0 1 153 1595129 1594977 Thermus parvatiensis strain RL, complete genome blastn 5920 244 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus parvatiensis
18230201 18230201 PRJNA312615_P_NODE_46735_length_177_cov_1.218750_g46584_i0 PRJNA312615 46735 177 1.21875 2.1571875 Deinococcus radiophilus 32062 Bacteria Bacteria 254 3.82e-63   NTclustered gi|2152123021|gb|CP086380.1| 32062 g46584 i0 92.655 194.457627118644 177 11 99 2 2 176 1814848 1815024 Deinococcus radiophilus strain ATCC 27603 chromosome, complete genome blastn 34419 254 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiophilus
30611255 30611255 PRJNA312615_P_NODE_13513_length_335_cov_2.104895_g13362_i0 PRJNA312615 13513 335 2.104895 7.05139825 Thermotogota bacterium 2053689 Bacteria Bacteria 45.8 0.00722   NR MCL4407461.1 2053689 g13362 i0 48.1 0.483582089552239 54 26 46.6 1 230 75 107 160 MCL4407461.1 DUF4382 domain-containing protein [Thermotogota bacterium] diamond 162 45.8 1 Bacteria   Thermotogati Thermotogota         Thermotogota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;