RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA312615", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 15 ✖

tax_kingdom 1

  • Metazoa · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA312615 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11266866 11266866 PRJNA312615_P_NODE_10929_length_374_cov_1.793846_g10779_i0 PRJNA312615 10929 374 1.793846 6.70898404 Metazoa 33208 Platyhelminthes Platyhelminthes 686 0   NTclustered gi|60687563|gb|AY914894.1| 6182 g10779 i0 99.733 100 374 1 100 0 1 374 9 382 Schistosoma japonicum unknown mRNA blastn 37400 686 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
15680483 15680483 PRJNA312615_P_NODE_11293_length_368_cov_1.040752_g11143_i0 PRJNA312615 11293 368 1.040752 3.82996736 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.035   NTclustered gi|687608334|emb|LK508843.1| 57078 g11143 i0 100 0.0760869565217391 28 0 8 0 52 79 538 511 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0109345 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
18915303 18915303 PRJNA312615_P_NODE_3715_length_608_cov_2.449016_g3576_i0 PRJNA312615 3715 608 2.449016 14.89001728 Opisthokonta 33154 Platyhelminthes Platyhelminthes 244 4.6e-79   NR KAA0196388.1 27845 g3576 i0 68.9 19.5098684210526 167 52 82.4 0 545 45 10 176 KAA0196388.1 Ribosomal protein L11 [Fasciolopsis buskii] diamond 11862 244 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciolopsis Fasciolopsis buskii
23330835 23330835 PRJNA312615_P_NODE_7699_length_442_cov_13.664122_g7549_i0 PRJNA312615 7699 442 13.664122 60.39541924 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 734 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g7549 i0 96.818 0.995475113122172 440 13 99 1 3 442 450 12 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 440 734 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
26725676 26725676 PRJNA312615_P_NODE_42341_length_188_cov_1.438849_g42190_i0 PRJNA312615 42341 188 1.438849 2.70503612 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 76.3 1.59e-14   NR PAA67138.1 282301 g42190 i0 54.8 4.89893617021277 62 27 98.9 1 186 1 182 242 PAA67138.1 hypothetical protein BOX15_Mlig003837g1, partial [Macrostomum lignano] diamond 921 76.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
27327204 27327204 PRJNA312615_P_NODE_9543_length_401_cov_1.309659_g9393_i0 PRJNA312615 9543 401 1.309659 5.25173259 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 75.5 6.84e-13   NR PAA93605.1 282301 g9393 i0 36.2 0.785536159600998 105 65 78.6 2 73 387 327 429 PAA93605.1 hypothetical protein BOX15_Mlig031413g1 [Macrostomum lignano] diamond 315 75.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
27674718 27674718 PRJNA312615_P_NODE_36044_length_204_cov_2.516129_g35893_i0 PRJNA312615 36044 204 2.516129 5.13290316 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 67.8 3.41e-11   NR AKN21711.1 79327 g35893 i0 53 0.970588235294118 66 28 94.1 2 13 204 240 304 AKN21711.1 NEK8-2 [Schmidtea mediterranea] diamond 198 67.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
27800938 27800938 PRJNA312615_P_NODE_484_length_1283_cov_5.277147_g422_i0 PRJNA312615 484 1283 5.277147 67.70579601 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 100 6.46e-19   NR PAA86220.1 282301 g422 i0 31.7 0.376461418550273 161 109 37.4 1 654 1133 76 236 PAA86220.1 hypothetical protein BOX15_Mlig009159g3 [Macrostomum lignano] diamond 483 100 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
28527228 28527228 PRJNA312615_P_NODE_56647_length_163_cov_0.894737_g56496_i0 PRJNA312615 56647 163 0.894737 1.45842131 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 40 0.0485   NR AAX30333.2 6182 g56496 i0 65 0.368098159509202 20 7 36.8 0 65 6 79 98 AAX30333.2 SJCHGC03024 protein, partial [Schistosoma japonicum] diamond 60 40 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
28607720 28607720 PRJNA312615_P_NODE_41647_length_190_cov_1.056738_g41496_i0 PRJNA312615 41647 190 1.056738 2.0078022 Paragonimus 34503 Platyhelminthes Platyhelminthes 46.2 0.00113   NR KAF7232309.1 59628 g41496 i0 48.9 1.42105263157895 45 22 71.1 1 175 41 718 761 KAF7232309.1 Intraflagellar transport protein [Paragonimus skrjabini miyazakii] diamond 270 46.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus skrjabini miyazakii
29032438 29032438 PRJNA312615_P_NODE_18728_length_282_cov_1.064378_g18577_i0 PRJNA312615 18728 282 1.064378 3.00154596 Paragonimus westermani 34504 Platyhelminthes Platyhelminthes 43.9 0.0233   NR KAF8564167.1 34504 g18577 i0 32.4 1.08510638297872 102 55 93.6 3 1 264 156 257 KAF8564167.1 hypothetical protein P879_05296 [Paragonimus westermani] diamond 306 43.9 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus westermani
29158673 29158673 PRJNA312615_P_NODE_41329_length_190_cov_1.943262_g41178_i0 PRJNA312615 41329 190 1.943262 3.6921978 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 54.3 1.79e-7   NR TNN05879.1 6182 g41178 i0 39.7 2.74736842105263 58 35 91.6 0 186 13 33 90 TNN05879.1 Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta [Schistosoma japonicum] diamond 522 54.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
29821276 29821276 PRJNA312615_P_NODE_13271_length_338_cov_3.245675_g13120_i0 PRJNA312615 13271 338 3.245675 10.9703815 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 45.4 0.0118   NR PAA74793.1 282301 g13120 i0 38.1 0.559171597633136 63 37 54.1 1 14 196 177 239 PAA74793.1 hypothetical protein BOX15_Mlig014438g2, partial [Macrostomum lignano] diamond 189 45.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
29947969 29947969 PRJNA312615_P_NODE_23531_length_252_cov_0.802956_g23380_i0 PRJNA312615 23531 252 0.802956 2.02344912 Schistosoma turkestanicum 1163369 Platyhelminthes Platyhelminthes 62.8 2.53e-10   NR CAH8566930.1 1163369 g23380 i0 55 3.21428571428571 60 26 70.2 1 249 73 12 71 CAH8566930.1 unnamed protein product [Schistosoma turkestanicum] diamond 810 62.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma turkestanicum
30990672 30990672 PRJNA312615_P_NODE_28894_length_228_cov_0.832402_g28743_i0 PRJNA312615 28894 228 0.832402 1.89787656 Protopolystoma xenopodis 117903 Platyhelminthes Platyhelminthes 56.6 3.45e-7   NR VEL22766.1 117903 g28743 i0 43.9 0.75 57 31 75 1 174 4 103 158 VEL22766.1 unnamed protein product [Protopolystoma xenopodis] diamond 171 56.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Protopolystoma Protopolystoma xenopodis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;