RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA312615", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA312615 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27264028 27264028 PRJNA312615_P_NODE_41243_length_191_cov_0.922535_g41092_i0 PRJNA312615 41243 191 0.922535 1.76204185 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 65.5 4.3e-11   NR XP_001323614.1 412133 g41092 i0 52.5 1.91623036649215 61 28 94.2 1 186 7 91 151 XP_001323614.1 GTPase protein [Trichomonas vaginalis G3] diamond 366 65.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27800935 27800935 PRJNA312615_P_NODE_4264_length_575_cov_23.418251_g4121_i0 PRJNA312615 4264 575 23.418251 134.65494325 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 199 1.68e-61   NR XP_068360038.1 1144522 g4121 i0 57.2 6.39652173913043 173 74 90.3 0 547 29 5 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 3678 199 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28810797 28810797 PRJNA312615_P_NODE_31728_length_217_cov_1.553571_g31577_i0 PRJNA312615 31728 217 1.553571 3.37124907 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 43.5 0.0145   NR XP_001306049.1 412133 g31577 i0 41.4 1.58986175115207 70 40 95.4 1 10 216 134 203 XP_001306049.1 hypothetical protein TVAGG3_0774660 [Trichomonas vaginalis G3] diamond 345 43.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;