RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA312615", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA312615 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28084881 28084881 PRJNA312615_P_NODE_1005_length_986_cov_4.974386_g912_i0 PRJNA312615 1005 986 4.974386 49.04744596 Giardia intestinalis 5741 Fornicata other_Eukaryota 51.2 0.00381   NR ESU43722.1 5741 g912 i0 28.6 0.511156186612576 168 93 48.1 5 891 418 4 154 ESU43722.1 Variant-specific surface protein, partial [Giardia intestinalis] diamond 504 51.2 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
32697829 32697829 PRJNA312615_P_NODE_4840_length_545_cov_1.895161_g4694_i0 PRJNA312615 4840 545 1.895161 10.32862745 Hexamita inflata 28002 Fornicata other_Eukaryota 90.5 2.33e-19   NR CAK8791145.1 28002 g4694 i0 38.9 0.721100917431193 131 66 72.1 4 93 485 33 149 CAK8791145.1 HINF_096380 [Hexamita inflata] diamond 393 90.5 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
32715446 32715446 PRJNA312615_P_NODE_47600_length_175_cov_1.007937_g47449_i0 PRJNA312615 47600 175 1.007937 1.76388975 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 44.3 0.00437   NR CAB06038.1 5741 g47449 i0 51.7 4.61142857142857 58 21 90.9 3 16 174 173 228 CAB06038.1 variant-specific surface protein VSP4A1 [Giardia intestinalis] diamond 807 44.7 0.991051454138702 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;