RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA312615", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA312615 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27422132 27422132 PRJNA312615_P_NODE_38423_length_198_cov_1.362416_g38272_i0 PRJNA312615 38423 198 1.362416 2.69758368 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 114 3.35e-28   NR MDD2871145.1 2044595 g38272 i0 81 0.954545454545455 63 12 95.5 0 9 197 184 246 MDD2871145.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 189 114 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30359137 30359137 PRJNA312615_P_NODE_43212_length_186_cov_1.284672_g43061_i0 PRJNA312615 43212 186 1.284672 2.38948992 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 114 3.0899999999999998e-28   NR MBW7954623.1 2044595 g43061 i0 98.3 1.93548387096774 60 1 96.8 0 185 6 199 258 MBW7954623.1 type II/IV secretion system protein [Candidatus Altimarinota bacterium] diamond 360 114 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;