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contig_metadata

17 rows where bioproject = "PRJNA312615" and tax_clade = "Bacteria candidate phyla"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 17 ✖

bioproject 1

  • PRJNA312615 · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11267343 11267343 PRJNA312615_P_NODE_54729_length_164_cov_1.773913_g54578_i0 PRJNA312615 54729 164 1.773913 2.90921732 Candidatus Southlakia 3350975 Bacteria Bacteria 283 4.46e-72   NTclustered gi|2028829559|gb|CP072328.1| 713051 g54578 i0 97.59 62.8841463414634 166 2 100 2 1 164 906382 906547 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 10313 283 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349
27422132 27422132 PRJNA312615_P_NODE_38423_length_198_cov_1.362416_g38272_i0 PRJNA312615 38423 198 1.362416 2.69758368 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 114 3.35e-28   NR MDD2871145.1 2044595 g38272 i0 81 0.954545454545455 63 12 95.5 0 9 197 184 246 MDD2871145.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 189 114 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27548172 27548172 PRJNA312615_P_NODE_42444_length_188_cov_1.100719_g42293_i0 PRJNA312615 42444 188 1.100719 2.06935172 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 55.8 2.72e-8   NR MCD6081268.1 2052148 g42293 i0 48.4 1.97872340425532 62 31 97.3 1 188 6 14 75 MCD6081268.1 RNA-binding protein [candidate division WOR-3 bacterium] diamond 372 55.8 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
27579716 27579716 PRJNA312615_P_NODE_28484_length_229_cov_1.694444_g28333_i0 PRJNA312615 28484 229 1.694444 3.88027676 Minisyncoccota bacterium 2053589 Bacteria Bacteria 55.1 1.85e-7   NR MDR3582048.1 2053589 g28333 i0 43.3 0.877729257641921 67 38 87.8 0 23 223 47 113 MDR3582048.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 201 55.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28874259 28874259 PRJNA312615_P_NODE_54468_length_165_cov_0.879310_g54317_i0 PRJNA312615 54468 165 0.87931 1.4508615 Candidatus Peribacteraceae bacterium 2735830 Bacteria Bacteria 52.4 8.47e-7   NR MFA6039013.1 2735830 g54317 i0 74.3 1.25454545454545 35 9 63.6 0 112 8 8 42 MFA6039013.1 response regulator [Candidatus Peribacteraceae bacterium] diamond 207 52.4 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales     Candidatus Peribacteraceae bacterium
29505707 29505707 PRJNA312615_P_NODE_54490_length_165_cov_0.879310_g54339_i0 PRJNA312615 54490 165 0.87931 1.4508615 Minisyncoccota bacterium 2053589 Bacteria Bacteria 99 8.03e-26   NR MBP9839972.1 2053589 g54339 i0 88 0.909090909090909 50 6 90.9 0 151 2 4 53 MBP9839972.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 150 99 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29821277 29821277 PRJNA312615_P_NODE_18971_length_280_cov_1.255411_g18820_i0 PRJNA312615 18971 280 1.255411 3.5151508 Patescibacteria group bacterium 2052139 Bacteria Bacteria 143 7.369999999999999e-38   NR MCL4419431.1 2052139 g18820 i0 90.7 0.803571428571429 75 7 80.4 0 263 39 513 587 MCL4419431.1 hypothetical protein [Patescibacteria group bacterium] diamond 225 143 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
29997194 29997194 PRJNA312615_P_NODE_21891_length_261_cov_0.929245_g21740_i0 PRJNA312615 21891 261 0.929245 2.42532945 Bacteria 2 Bacteria Bacteria 49.3 1.1e-5   NR MEO0242362.1 2052148 g21740 i0 52.8 4.54022988505747 36 17 41.4 0 257 150 18 53 MEO0242362.1 elongation factor Tu [candidate division WOR-3 bacterium] diamond 1185 49.7 0.991951710261569 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
30359137 30359137 PRJNA312615_P_NODE_43212_length_186_cov_1.284672_g43061_i0 PRJNA312615 43212 186 1.284672 2.38948992 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 114 3.0899999999999998e-28   NR MBW7954623.1 2044595 g43061 i0 98.3 1.93548387096774 60 1 96.8 0 185 6 199 258 MBW7954623.1 type II/IV secretion system protein [Candidatus Altimarinota bacterium] diamond 360 114 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30516575 30516575 PRJNA312615_P_NODE_28353_length_230_cov_1.088398_g28202_i0 PRJNA312615 28353 230 1.088398 2.5033154 Candidatus Poribacteria bacterium 2026781 Bacteria Bacteria 43.9 0.0118   NR MEK7400269.1 2026781 g28202 i0 31.7 0.821739130434783 63 41 79.6 1 184 2 189 251 MEK7400269.1 tetratricopeptide repeat protein [Candidatus Poribacteria bacterium] diamond 189 43.9 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium
30737650 30737650 PRJNA312615_P_NODE_31094_length_219_cov_1.800000_g30943_i0 PRJNA312615 31094 219 1.8 3.942 Patescibacteria group bacterium 2052139 Bacteria Bacteria 55.5 7.57e-7   NR MEK7559461.1 2052139 g30943 i0 61.5 1.06849315068493 39 15 53.4 0 102 218 1 39 MEK7559461.1 DnaJ C-terminal domain-containing protein [Patescibacteria group bacterium] diamond 234 55.5 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
31116665 31116665 PRJNA312615_P_NODE_58075_length_162_cov_0.902655_g57924_i0 PRJNA312615 58075 162 0.902655 1.4623011 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 57 1.07e-7   NR HSW88864.1 2973664 g57924 i0 65.4 0.962962962962963 52 18 96.3 0 3 158 34 85 HSW88864.1 hypothetical protein [Candidatus Saccharimonadales bacterium] diamond 156 57 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
31179785 31179785 PRJNA312615_P_NODE_42515_length_188_cov_0.920863_g42364_i0 PRJNA312615 42515 188 0.920863 1.73122244 Candidatus Dependentiae bacterium 2030827 Bacteria Bacteria 53.9 2.48e-7   NR RTL04002.1 2030827 g42364 i0 44.4 1.00531914893617 63 31 94.1 1 187 11 8 70 RTL04002.1 MAG: hypothetical protein EKK58_11650 [Candidatus Dependentiae bacterium] diamond 189 53.9 1 Bacteria Bacteria candidate phyla             Candidatus Babelota bacterium
31830041 31830041 PRJNA312615_P_NODE_10277_length_387_cov_1.204142_g10127_i0 PRJNA312615 10277 387 1.204142 4.66002954 root 1 Root_unresolved Root_unresolved 48.5 3.4e-4   NR MBM3242146.1 2026781 g10127 i0 32.2 2.70542635658915 90 60 69.8 1 386 117 20 108 MBM3242146.1 hypothetical protein [Candidatus Poribacteria bacterium] diamond 1047 48.9 0.991820040899796 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium
32256012 32256012 PRJNA312615_P_NODE_40078_length_194_cov_1.055172_g39927_i0 PRJNA312615 40078 194 1.055172 2.04703368 Patescibacteria group bacterium 2052139 Bacteria Bacteria 43.5 0.0104   NR MCL5795673.1 2052139 g39927 i0 36.5 0.804123711340206 52 33 80.4 0 28 183 349 400 MCL5795673.1 recombinase family protein [Patescibacteria group bacterium] diamond 156 43.5 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
32634719 32634719 PRJNA312615_P_NODE_23100_length_254_cov_0.931707_g22949_i0 PRJNA312615 23100 254 0.931707 2.36653578 Candidatus Absconditabacterales bacterium 2927939 Bacteria Bacteria 42.7 0.0432   NR MCK9467178.1 2927939 g22949 i0 43.1 0.767716535433071 65 28 72 3 226 44 766 825 MCK9467178.1 type IV secretion system protein [Candidatus Absconditabacterales bacterium] diamond 195 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota   Candidatus Absconditabacterales     Candidatus Absconditabacterales bacterium
32760892 32760892 PRJNA312615_P_NODE_14660_length_321_cov_1.062500_g14509_i0 PRJNA312615 14660 321 1.0625 3.410625 Minisyncoccota bacterium 2053589 Bacteria Bacteria 61.2 2.83e-8   NR MDR3582082.1 2053589 g14509 i0 44.1 1.55140186915888 59 33 55.1 0 2 178 302 360 MDR3582082.1 EF-hand domain-containing protein [Candidatus Paceibacterota bacterium] diamond 498 61.2 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;