RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA312107" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA312107 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8716245 8716245 PRJNA312107_P_NODE_21527_length_166_cov_0.888889_g21361_i0 PRJNA312107 21527 166 0.888889 1.47555574 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 307 2.69e-79   NTclustered gi|2506304296|ref|XR_008789413.1| 6465 g21361 i0 100 12.0120481927711 166 0 100 0 1 166 2099 1934 PREDICTED: Patella vulgata large subunit ribosomal RNA (LOC130014397), rRNA blastn 1994 307 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
11856312 11856312 PRJNA312107_P_NODE_7950_length_253_cov_8.171569_g7784_i0 PRJNA312107 7950 253 8.171569 20.67406957 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.023   NTclustered gi|2912999747|dbj|AP039606.1| 145626 g7784 i0 100 0.33201581027668 28 0 11 0 226 253 43688071 43688098 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 25, sequence blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
13131311 13131311 PRJNA312107_P_NODE_14411_length_192_cov_1.454545_g14245_i0 PRJNA312107 14411 192 1.454545 2.7927264 Bradybaena similaris 145626 Mollusca Mollusca 65.8 2.12e-6   NTclustered gi|2912981848|dbj|AP039587.1| 145626 g14245 i0 95.122 0.369791666666667 41 2 21 0 152 192 46451744 46451784 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 6, sequence blastn 71 65.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
28369050 28369050 PRJNA312107_P_NODE_22646_length_165_cov_0.896552_g22480_i0 PRJNA312107 22646 165 0.896552 1.4793108 Bradybaena similaris 145626 Mollusca Mollusca 55.1 3.15e-7   NR BFZ24356.1 145626 g22480 i0 43.1 1.85454545454545 51 28 92.7 1 162 10 5 54 BFZ24356.1 hypothetical protein BsWGS_27395 [Bradybaena similaris] diamond 306 55.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;