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contig_metadata

27 rows where bioproject = "PRJNA312107" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 27 ✖

tax_clade 1

bioproject 1

  • PRJNA312107 · 27 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1652326 1652326 PRJNA312107_P_NODE_1142_length_653_cov_9.293046_g993_i0 PRJNA312107 1142 653 9.293046 60.68359038 Aspidisca lynceus 2035364 SAR_Eukaryotes SAR_Eukaryotes 1027 0   NTclustered gi|2328859120|gb|OP828525.1| 2035364 g993 i0 99.469 88.490045941807 565 3 87 0 89 653 1750 1186 Aspidisca lynceus isolate LCY2015101602 large subunit ribosomal RNA gene, partial sequence blastn 57784 1027 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Aspidiscidae Aspidisca Aspidisca lynceus
2928274 2928274 PRJNA312107_P_NODE_25283_length_162_cov_2.442478_g25117_i0 PRJNA312107 25283 162 2.442478 3.95681436 Cyclidium glaucoma 35100 SAR_Eukaryotes SAR_Eukaryotes 294 2.03e-75   NTclustered gi|90657133|gb|DQ442791.1| 35100 g25117 i0 99.383 12.4444444444444 162 1 100 0 1 162 467 628 Cyclidium glaucoma isolate ES4 28S ribosomal RNA gene, partial sequence blastn 2016 294 1 Eukaryota Sar   Ciliophora Oligohymenophorea Pleuronematida Cyclidiidae Cyclidium Cyclidium glaucoma
3614215 3614215 PRJNA312107_P_NODE_23343_length_164_cov_1.808696_g23177_i0 PRJNA312107 23343 164 1.808696 2.96626144 Spirostomum 37867 SAR_Eukaryotes SAR_Eukaryotes 303 3.42e-78   NTclustered gi|1859549041|gb|MT640277.1| 60926 g23177 i0 100 100.15243902439 164 0 100 0 1 164 586 749 Spirostomum sp. isolate 3S.teres-18S small subunit ribosomal RNA gene, partial sequence blastn 16425 303 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Spirostomidae Spirostomum Spirostomum sp.
4204856 4204856 PRJNA312107_P_NODE_3184_length_392_cov_18.335277_g3018_i0 PRJNA312107 3184 392 18.335277 71.87428584 uncultured ciliate 187299 SAR_Eukaryotes SAR_Eukaryotes 643 4.859999999999999e-180   NTclustered gi|221185880|gb|FJ577827.1| 187299 g3018 i0 99.715 102.387755102041 351 1 90 0 42 392 1 351 Uncultured ciliate clone Joinv03 18S ribosomal RNA gene, partial sequence blastn 40136 643 1 Eukaryota Sar   Ciliophora         uncultured ciliate
6755203 6755203 PRJNA312107_P_NODE_1246_length_626_cov_18.649913_g1093_i0 PRJNA312107 1246 626 18.649913 116.74845538 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 758 0   NTclustered gi|2651357788|gb|PP174303.1| 41631 g1093 i0 95.208 74.5063897763578 480 22 77 1 147 626 3849 3371 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 46641 758 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
7441549 7441549 PRJNA312107_P_NODE_11626_length_213_cov_1.079268_g11460_i0 PRJNA312107 11626 213 1.079268 2.29884084 Cyclidium 35099 SAR_Eukaryotes SAR_Eukaryotes 383 5.8499999999999996e-102   NTclustered gi|1150566195|gb|KX578216.1| 35100 g11460 i0 99.061 100.737089201878 213 2 100 0 1 213 378 590 Cyclidium glaucoma isolate SUVRK07 18S ribosomal RNA gene, partial sequence blastn 21457 383 1 Eukaryota Sar   Ciliophora Oligohymenophorea Pleuronematida Cyclidiidae Cyclidium Cyclidium glaucoma
7441577 7441577 PRJNA312107_P_NODE_3266_length_388_cov_1.784661_g3100_i0 PRJNA312107 3266 388 1.784661 6.92448468 Vorticellidae 85904 SAR_Eukaryotes SAR_Eukaryotes 497 3.96e-136   NTclustered gi|363412153|gb|JN120227.1| 60850 g3100 i0 90.722 100.005154639175 388 15 100 9 1 388 598 964 Vorticella convallaria isolate 96Vorsp16 18S ribosomal RNA gene, partial sequence blastn 38802 497 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella convallaria
9305710 9305710 PRJNA312107_P_NODE_6968_length_270_cov_1.597285_g6802_i0 PRJNA312107 6968 270 1.597285 4.3126695 Boveria subcylindrica 693871 SAR_Eukaryotes SAR_Eukaryotes 357 4.6799999999999997e-94   NTclustered gi|514076836|gb|KF256826.1| 693871 g6802 i0 90.58 84.6740740740741 276 16 100 8 1 270 1102 1373 Boveria subcylindrica isolate FXP2009030301 large subunit ribosomal RNA gene, partial sequence blastn 22862 357 1 Eukaryota Sar   Ciliophora Oligohymenophorea Thigmotrichida Hemispeiridae Boveria Boveria subcylindrica
11266834 11266834 PRJNA312107_P_NODE_17689_length_173_cov_1.677419_g17523_i0 PRJNA312107 17689 173 1.677419 2.90193487 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 255 1.03e-63   NTclustered gi|759083543|gb|KM222160.1| 5980 g17523 i0 93.182 8.61271676300578 176 9 100 2 1 173 710 535 Colpoda inflata voucher SXK2011071402 large subunit ribosomal RNA gene, partial sequence blastn 1490 255 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda inflata
11856175 11856175 PRJNA312107_P_NODE_11730_length_212_cov_1.239264_g11564_i0 PRJNA312107 11730 212 1.239264 2.62723968 Dexiostoma campyla 5927 SAR_Eukaryotes SAR_Eukaryotes 375 9.74e-100   NTclustered gi|174196|gb|M98366.1|CPDRRLSA 5927 g11564 i0 98.585 87.3679245283019 212 3 100 0 1 212 95 306 Colpidium campylum large subunit ribosomal RNA, 5' end blastn 18522 375 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Turaniellidae Dexiostoma Dexiostoma campyla
13131310 13131310 PRJNA312107_P_NODE_14391_length_192_cov_1.846154_g14225_i0 PRJNA312107 14391 192 1.846154 3.54461568 uncultured Scuticociliatia 547477 SAR_Eukaryotes SAR_Eukaryotes 305 1.15e-78   NTclustered gi|299778449|gb|GQ330629.1| 547477 g14225 i0 96.237 94.2135416666667 186 7 97 0 7 192 294 109 Uncultured Scuticociliatia clone PRS2c_4E_17 18S ribosomal RNA gene, partial sequence blastn 18089 305 1 Eukaryota Sar   Ciliophora Oligohymenophorea       uncultured Scuticociliatia
13131400 13131400 PRJNA312107_P_NODE_25351_length_162_cov_1.637168_g25185_i0 PRJNA312107 25351 162 1.637168 2.65221216 Chaenea sp. FG-2015 1607874 SAR_Eukaryotes SAR_Eukaryotes 198 1.64e-46   NTclustered gi|759083536|gb|KM222153.1| 1607874 g25185 i0 88.889 101.283950617284 162 16 99 2 1 161 860 1020 Chaenea sp. FG-2015 voucher FXP07122006 large subunit ribosomal RNA gene, partial sequence blastn 16408 198 1 Eukaryota Sar   Ciliophora Litostomatea Haptorida Trachelophyllidae Chaenea Chaenea sp. FG-2015
13817018 13817018 PRJNA312107_P_NODE_12791_length_204_cov_1.206452_g12625_i0 PRJNA312107 12791 204 1.206452 2.46116208 Spirotrichea 33829 SAR_Eukaryotes SAR_Eukaryotes 231 2.13e-56   NTclustered gi|1216628416|gb|KX099210.1| 1560366 g12625 i0 88.205 95.5294117647059 195 21 95 2 11 204 409 216 Pseudocyrtohymena koreana clone PK4 28S ribosomal RNA gene, partial sequence blastn 19488 231 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Pseudocyrtohymena Pseudocyrtohymena koreana
14406464 14406464 PRJNA312107_P_NODE_11352_length_215_cov_1.819277_g11186_i0 PRJNA312107 11352 215 1.819277 3.91144555 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 254 4.84e-63   NTclustered gi|2651357791|gb|PP174306.1| 41631 g11186 i0 87.963 49.5116279069767 216 25 100 1 1 215 3930 3715 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10645 254 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
15091359 15091359 PRJNA312107_P_NODE_7732_length_257_cov_1.653846_g7566_i0 PRJNA312107 7732 257 1.653846 4.25038422 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 429 9.24e-116   NTclustered gi|10782|emb|X54004.1| 5908 g7566 i0 96.875 59.0428015564202 256 8 99 0 1 256 3251 2996 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 15174 429 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
15680298 15680298 PRJNA312107_P_NODE_11473_length_214_cov_1.539394_g11307_i0 PRJNA312107 11473 214 1.539394 3.29430316 Frontonia depressa 3042678 SAR_Eukaryotes SAR_Eukaryotes 187 4.9499999999999984e-43   NTclustered gi|2496410941|gb|OQ869833.1| 3042678 g11307 i0 82.727 100.490654205607 220 28 100 8 1 214 1677 1462 Frontonia depressa isolate S225 large subunit ribosomal RNA gene, partial sequence blastn 21505 187 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Frontoniidae Frontonia Frontonia depressa
15680409 15680409 PRJNA312107_P_NODE_2453_length_445_cov_2.181818_g2287_i0 PRJNA312107 2453 445 2.181818 9.7090901 Cyclidium glaucoma 35100 SAR_Eukaryotes SAR_Eukaryotes 695 0   NTclustered gi|90657161|gb|DQ442819.1| 35100 g2287 i0 98.477 89.8516853932584 394 6 89 0 52 445 418 25 Cyclidium glaucoma isolate ES45 28S ribosomal RNA gene, partial sequence blastn 39984 695 1 Eukaryota Sar   Ciliophora Oligohymenophorea Pleuronematida Cyclidiidae Cyclidium Cyclidium glaucoma
16366095 16366095 PRJNA312107_P_NODE_18033_length_171_cov_2.557377_g17867_i0 PRJNA312107 18033 171 2.557377 4.37311467 Cyclidium 35099 SAR_Eukaryotes SAR_Eukaryotes 315 1.65e-81   NTclustered gi|91093110|gb|DQ442828.1| 35100 g17867 i0 100 95.8304093567251 170 0 99 0 1 170 388 557 Cyclidium glaucoma isolate ES4 18S ribosomal RNA gene, partial sequence blastn 16387 315 1 Eukaryota Sar   Ciliophora Oligohymenophorea Pleuronematida Cyclidiidae Cyclidium Cyclidium glaucoma
18229346 18229346 PRJNA312107_P_NODE_4375_length_337_cov_1.177083_g4209_i0 PRJNA312107 4375 337 1.177083 3.96676971 Chaenea sp. FG-2015 1607874 SAR_Eukaryotes SAR_Eukaryotes 501 2.63e-137   NTclustered gi|759083536|gb|KM222153.1| 1607874 g4209 i0 93.472 99.9436201780415 337 22 100 0 1 337 1086 1422 Chaenea sp. FG-2015 voucher FXP07122006 large subunit ribosomal RNA gene, partial sequence blastn 33681 501 1 Eukaryota Sar   Ciliophora Litostomatea Haptorida Trachelophyllidae Chaenea Chaenea sp. FG-2015
18914962 18914962 PRJNA312107_P_NODE_16995_length_177_cov_1.617188_g16829_i0 PRJNA312107 16995 177 1.617188 2.86242276 Hymenostomatida 31277 SAR_Eukaryotes SAR_Eukaryotes 316 4.799999999999999e-82   NTclustered gi|126142793|gb|EF070266.1| 5928 g16829 i0 98.87 100.158192090395 177 2 100 0 1 177 749 573 Colpidium colpoda 18S small subunit ribosomal RNA gene, partial sequence blastn 17728 316 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Turaniellidae Colpidium Colpidium colpoda
20189709 20189709 PRJNA312107_P_NODE_19956_length_168_cov_0.873950_g19790_i0 PRJNA312107 19956 168 0.87395 1.468236 root 1 Root_unresolved Root_unresolved 110 8.26e-20   NTclustered gi|2386226614|ref|XM_001430267.2| 5888 g19790 i0 84.071 10.2083333333333 113 18 67 0 23 135 809 697 Paramecium tetraurelia uncharacterized protein (GSPATT00032758001), partial mRNA blastn 1715 111 0.990990990990991 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
20779109 20779109 PRJNA312107_P_NODE_19797_length_168_cov_0.873950_g19631_i0 PRJNA312107 19797 168 0.87395 1.468236 Cardiostomatella vermiformis 311390 SAR_Eukaryotes SAR_Eukaryotes 111 2.3e-20   NTclustered gi|404425895|gb|JX310024.1| 311390 g19631 i0 86.667 2.44047619047619 105 9 63 2 1 105 2167 2266 Cardiostomatella vermiformis voucher FXP2007101002 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 410 111 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Loxocephalidae Cardiostomatella Cardiostomatella vermiformis
20779186 20779186 PRJNA312107_P_NODE_4937_length_317_cov_7.182836_g4771_i0 PRJNA312107 4937 317 7.182836 22.76959012 Aspidisca lynceus 2035364 SAR_Eukaryotes SAR_Eukaryotes 534 2.42e-147   NTclustered gi|2328859120|gb|OP828525.1| 2035364 g4771 i0 97.161 99.6750788643533 317 8 100 1 1 317 1152 837 Aspidisca lynceus isolate LCY2015101602 large subunit ribosomal RNA gene, partial sequence blastn 31597 534 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Aspidiscidae Aspidisca Aspidisca lynceus
22054110 22054110 PRJNA312107_P_NODE_18338_length_170_cov_1.396694_g18172_i0 PRJNA312107 18338 170 1.396694 2.3743798 Prorodon ovum 1348332 SAR_Eukaryotes SAR_Eukaryotes 222 1.02e-53   NTclustered gi|514076796|gb|KC771340.1| 1348332 g18172 i0 99.187 70.6294117647059 123 1 72 0 1 123 351 229 Prorodon ovum isolate XY09022601 large subunit ribosomal RNA gene, partial sequence blastn 12007 222 1 Eukaryota Sar   Ciliophora Prostomatea Prorodontida Prorodontidae Prorodon Prorodon ovum
23329586 23329586 PRJNA312107_P_NODE_11559_length_213_cov_2.304878_g11393_i0 PRJNA312107 11559 213 2.304878 4.90939014 Carchesium polypinum 168244 SAR_Eukaryotes SAR_Eukaryotes 344 2.76e-90   NTclustered gi|2304601474|gb|OP458295.1| 168244 g11393 i0 95.775 96.3521126760563 213 9 100 0 1 213 1652 1440 Carchesium polypinum large subunit ribosomal RNA gene, partial sequence blastn 20523 344 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Carchesium Carchesium polypinum
28481432 28481432 PRJNA312107_P_NODE_18786_length_169_cov_0.866667_g18620_i0 PRJNA312107 18786 169 0.866667 1.46466723 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 74.3 9.69e-14   NR KAL4453236.1 5901 g18620 i0 81.8 1.56213017751479 44 8 78.1 0 164 33 492 535 KAL4453236.1 hypothetical protein ABPG73_022091 [Tetrahymena malaccensis] diamond 264 74.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
28905666 28905666 PRJNA312107_P_NODE_19708_length_168_cov_0.873950_g19542_i0 PRJNA312107 19708 168 0.87395 1.468236 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 118 3.67e-29   NR CDW71673.1 5949 g19542 i0 94.5 0.982142857142857 55 3 98.2 0 2 166 538 592 CDW71673.1 ubiquitin-activating enzyme e1 family protein [Stylonychia lemnae] diamond 165 118 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;