RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA312107", tax_kingdom = "Pseudomonadati" and tax_phylum = "Elusimicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Elusimicrobiota · 12 ✖

tax_kingdom 1

  • Pseudomonadati · 12 ✖

bioproject 1

  • PRJNA312107 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13131342 13131342 PRJNA312107_P_NODE_20151_length_168_cov_0.873950_g19985_i0 PRJNA312107 20151 168 0.87395 1.468236 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 198 1.7099999999999997e-46   NTclustered gi|2233025045|gb|CP096137.1| 2030800 g19985 i0 91.608 0.851190476190476 143 12 85 0 26 168 3537426 3537568 MAG: Elusimicrobia bacterium isolate JAD_PAG50586_1 chromosome, complete genome blastn 143 198 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
15680294 15680294 PRJNA312107_P_NODE_10813_length_220_cov_1.309942_g10647_i0 PRJNA312107 10813 220 1.309942 2.8818724 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 276 1.06e-69   NTclustered gi|2233025045|gb|CP096137.1| 2030800 g10647 i0 92.67 369.918181818182 191 14 87 0 30 220 3536925 3537115 MAG: Elusimicrobia bacterium isolate JAD_PAG50586_1 chromosome, complete genome blastn 81382 276 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
26662423 26662423 PRJNA312107_P_NODE_19781_length_168_cov_0.873950_g19615_i0 PRJNA312107 19781 168 0.87395 1.468236 Elusimicrobia bacterium RIFCSPLOWO2_ 1797946 Bacteria Bacteria 68.9 7.61e-12   NR OGR89178.1 1797946 g19615 i0 61.8 0.982142857142857 55 21 98.2 0 167 3 574 628 OGR89178.1 MAG: hypothetical protein A2992_09975 [Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12] diamond 165 68.9 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12
27579712 27579712 PRJNA312107_P_NODE_23784_length_164_cov_0.904348_g23618_i0 PRJNA312107 23784 164 0.904348 1.48313072 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 91.7 7.45e-20   NR UPT72808.1 2030800 g23618 i0 92.6 10.8658536585366 54 4 98.8 0 1 162 434 487 UPT72808.1 MAG: efflux RND transporter permease subunit [Elusimicrobiota bacterium] diamond 1782 91.7 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
27643113 27643113 PRJNA312107_P_NODE_20244_length_168_cov_0.873950_g20078_i0 PRJNA312107 20244 168 0.87395 1.468236 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 74.7 7.06e-14   NR MFA5860034.1 2030800 g20078 i0 63.6 0.982142857142857 55 20 98.2 0 3 167 773 827 MFA5860034.1 fibronectin type III domain-containing protein [Elusimicrobiota bacterium] diamond 165 74.7 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
29032429 29032429 PRJNA312107_P_NODE_21788_length_166_cov_0.888889_g21622_i0 PRJNA312107 21788 166 0.888889 1.47555574 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 60.1 9.64e-9   NR MFA5779178.1 2030800 g21622 i0 65.9 5.02409638554217 44 15 79.5 0 12 143 105 148 MFA5779178.1 glycine-rich domain-containing protein [Elusimicrobiota bacterium] diamond 834 60.1 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
29284594 29284594 PRJNA312107_P_NODE_24649_length_163_cov_0.912281_g24483_i0 PRJNA312107 24649 163 0.912281 1.48701803 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 53.1 2.72e-6   NR MBL8022726.1 2030800 g24483 i0 48.1 0.993865030674847 54 28 99.4 0 162 1 335 388 MBL8022726.1 metallophosphoesterase [Elusimicrobiota bacterium] diamond 162 53.1 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
29568877 29568877 PRJNA312107_P_NODE_21990_length_166_cov_0.888889_g21824_i0 PRJNA312107 21990 166 0.888889 1.47555574 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 82 1.66e-16   NR MBI4217706.1 2030800 g21824 i0 72.7 2.98192771084337 55 15 99.4 0 1 165 366 420 MBI4217706.1 hypothetical protein [Elusimicrobiota bacterium] diamond 495 82 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
29853189 29853189 PRJNA312107_P_NODE_24491_length_163_cov_0.912281_g24325_i0 PRJNA312107 24491 163 0.912281 1.48701803 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 57 8.75e-9   NR MEQ1919919.1 2030800 g24325 i0 86.7 0.552147239263804 30 4 55.2 0 92 3 3 32 MEQ1919919.1 DUF2752 domain-containing protein [Elusimicrobiota bacterium] diamond 90 57 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
31179770 31179770 PRJNA312107_P_NODE_20575_length_167_cov_0.881356_g20409_i0 PRJNA312107 20575 167 0.881356 1.47186452 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 80.5 6.07e-16   NR HXT02172.1 2030800 g20409 i0 76 3.59281437125748 50 12 89.8 0 2 151 408 457 HXT02172.1 8-oxoguanine deaminase [Elusimicrobiota bacterium] diamond 600 80.5 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium
32319221 32319221 PRJNA312107_P_NODE_22119_length_166_cov_0.888889_g21953_i0 PRJNA312107 22119 166 0.888889 1.47555574 Elusimicrobia bacterium RIFCSPLOWO2_ 1797947 Bacteria Bacteria 75.1 2.36e-15   NR OGR87225.1 1797947 g21953 i0 78.2 0.993975903614458 55 11 97.6 1 1 162 89 143 OGR87225.1 MAG: hypothetical protein A3A86_05175 [Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11] diamond 165 75.1 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11
32666398 32666398 PRJNA312107_P_NODE_23960_length_164_cov_0.904348_g23794_i0 PRJNA312107 23960 164 0.904348 1.48313072 Elusimicrobiota bacterium 2030800 Bacteria Bacteria 79.3 1.56e-15   NR MDE2426276.1 2030800 g23794 i0 70.6 0.932926829268293 51 15 93.3 0 153 1 8 58 MDE2426276.1 hypothetical protein [Elusimicrobiota bacterium] diamond 153 79.3 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;