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contig_metadata

10 rows where bioproject = "PRJNA312107", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

  • Metazoa · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA312107 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
377499 377499 PRJNA312107_P_NODE_10221_length_226_cov_1.158192_g10055_i0 PRJNA312107 10221 226 1.158192 2.61751392 Basiria sp. SAN-2005 345476 Nematoda Nematoda 335 1.7799999999999993e-87   NTclustered gi|76560594|gb|DQ145619.1| 345476 g10055 i0 97.927 54.6371681415929 193 4 85 0 34 226 1 193 Basiria sp. SAN-2005 28S ribosomal RNA gene, partial sequence blastn 12348 335 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Basiria Basiria sp. SAN-2005
1063645 1063645 PRJNA312107_P_NODE_16981_length_177_cov_1.625000_g16815_i0 PRJNA312107 16981 177 1.625 2.87625 Rhabditis 6244 Nematoda Nematoda 326 7.98e-85   NTclustered gi|1116078226|gb|KY119482.1| 293674 g16815 i0 100 99.2090395480226 176 0 99 0 1 176 182 7 Rhabditis cf. terricola JH-2004 isolate L07_CgCONTROL6_ 18S ribosomal RNA gene, partial sequence blastn 17560 326 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis cf. terricola JH-2004
7441572 7441572 PRJNA312107_P_NODE_23686_length_164_cov_0.904348_g23520_i0 PRJNA312107 23686 164 0.904348 1.48313072 Rhabditida 6236 Nematoda Nematoda 111 2.23e-20   NTclustered gi|2547219|gb|AF023856.1|AF023856 6304 g23520 i0 94.444 42.2682926829268 72 4 44 0 9 80 420 491 Meloidogyne arenaria blastn 6932 111 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne arenaria
9991802 9991802 PRJNA312107_P_NODE_25928_length_162_cov_0.920354_g25762_i0 PRJNA312107 25928 162 0.920354 1.49097348 Oscheius 42476 Nematoda Nematoda 137 3.6199999999999997e-28   NTclustered gi|1689836140|gb|MN082311.1| 2590334 g25762 i0 82.692 1.92592592592593 156 25 96 2 1 156 478 631 Oscheius sp. 1 TWN2097 small subunit ribosomal RNA gene, partial sequence blastn 312 137 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius sp. 1 TWN2097
10581618 10581618 PRJNA312107_P_NODE_9629_length_231_cov_2.571429_g9463_i0 PRJNA312107 9629 231 2.571429 5.94000099 Mylonchulus sp. K628_SM1056 3025613 Nematoda Nematoda 351 1.8199999999999998e-92   NTclustered gi|2439550342|gb|OQ377022.1| 3025613 g9463 i0 94.323 12.8441558441558 229 13 99 0 3 231 288 60 Mylonchulus sp. K628_SM1056 large subunit ribosomal RNA gene, partial sequence blastn 2967 351 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Mononchida Mylonchulidae Mylonchulus Mylonchulus sp. K628_SM1056
11266853 11266853 PRJNA312107_P_NODE_7109_length_267_cov_2.811927_g6943_i0 PRJNA312107 7109 267 2.811927 7.50784509 Rhabditis 6244 Nematoda Nematoda 387 5.9e-103   NTclustered gi|675118772|gb|KJ877243.1| 473155 g6943 i0 100 80.6404494382023 209 0 78 0 1 209 1644 1852 Rhabditis brassicae strain RS5617 28S ribosomal RNA gene, partial sequence blastn 21531 387 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis brassicae
14406478 14406478 PRJNA312107_P_NODE_14732_length_190_cov_1.943262_g14566_i0 PRJNA312107 14732 190 1.943262 3.6921978 Rhabditis sp. DF5059 479136 Nematoda Nematoda 351 1.4399999999999997e-92   NTclustered gi|158821900|gb|EU195964.1| 479136 g14566 i0 100 9.41578947368421 190 0 100 0 1 190 1354 1543 Rhabditis sp. DF5059 28S ribosomal RNA gene, partial sequence blastn 1789 351 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis sp. DF5059
14406609 14406609 PRJNA312107_P_NODE_8872_length_240_cov_2.429319_g8706_i0 PRJNA312107 8872 240 2.429319 5.8303656 Cervidellus neftasiensis 345484 Nematoda Nematoda 145 3.46e-30   NTclustered gi|76560654|gb|DQ145679.1| 345484 g8706 i0 81.967 39.525 183 22 73 8 66 240 554 375 Cervidellus neftasiensis 28S ribosomal RNA gene, partial sequence blastn 9486 145 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Cervidellus Cervidellus neftasiensis
20189701 20189701 PRJNA312107_P_NODE_16696_length_179_cov_1.200000_g16530_i0 PRJNA312107 16696 179 1.2 2.148 Rhabditis 6244 Nematoda Nematoda 331 1.74e-86   NTclustered gi|34105849|gb|AY284653.1| 293674 g16530 i0 100 98.4748603351955 179 0 100 0 1 179 704 882 Rhabditis cf. terricola JH-2004 isolate RhabTerZ 18S small subunit ribosomal RNA gene, partial sequence blastn 17627 331 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis cf. terricola JH-2004
29127171 29127171 PRJNA312107_P_NODE_11049_length_218_cov_1.195266_g10883_i0 PRJNA312107 11049 218 1.195266 2.60567988 Trichinella nativa 6335 Nematoda Nematoda 48.1 1.53e-5   NR KRZ47273.1 6335 g10883 i0 92.3 0.357798165137615 26 2 35.8 0 33 110 8 33 KRZ47273.1 hypothetical protein T02_1459 [Trichinella nativa] diamond 78 48.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;