RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA312107", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA312107 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1063649 1063649 PRJNA312107_P_NODE_20781_length_167_cov_0.881356_g20615_i0 PRJNA312107 20781 167 0.881356 1.47186452 Bacteria 2 Bacteria Bacteria 110 8.2e-20   NTclustered gi|1722470586|gb|CP042467.1| 2600177 g20615 i0 79.29 240.59880239521 169 25 100 6 1 167 703407 703567 Microvenator marinus strain V1718 chromosome, complete genome blastn 40180 110 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
2928263 2928263 PRJNA312107_P_NODE_24583_length_163_cov_0.912281_g24417_i0 PRJNA312107 24583 163 0.912281 1.48701803 uncultured delta proteobacterium 34034 Bacteria Bacteria 268 1.24e-67   NTclustered gi|108947841|gb|DQ640714.1| 34034 g24417 i0 96.364 107.196319018405 165 2 99 4 1 162 57 220 Uncultured delta proteobacterium clone Skagen101 16S ribosomal RNA gene, partial sequence blastn 17473 268 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
10581571 10581571 PRJNA312107_P_NODE_24229_length_164_cov_0.895652_g24063_i0 PRJNA312107 24229 164 0.895652 1.46886928 Bacteria 2 Bacteria Bacteria 95.1 1.07e-21   NR OGQ23139.1 1797848 g24063 i0 78.8 5.79878048780488 52 11 95.1 0 8 163 102 153 OGQ23139.1 MAG: glycosyl transferase [Deltaproteobacteria bacterium RBG_16_71_12] diamond 951 95.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_71_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;