RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA312107", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA312107 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1652331 1652331 PRJNA312107_P_NODE_12502_length_206_cov_1.324841_g12336_i0 PRJNA312107 12502 206 1.324841 2.72917246 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 154 4.8e-33   NTclustered gi|160358922|gb|EU252544.1| 88456 g12336 i0 83.237 21.1165048543689 173 24 84 5 26 198 1507 1674 Cyclospora cayetanensis 28S large subunit ribosomal RNA gene, partial sequence blastn 4350 154 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
1652400 1652400 PRJNA312107_P_NODE_23022_length_165_cov_0.896552_g22856_i0 PRJNA312107 23022 165 0.896552 1.4793108 Plasmodium knowlesi 5850 SAR_Eukaryotes SAR_Eukaryotes 119 1.34e-22   NTclustered gi|221053351|ref|XM_002258014.1| 5851 g22856 i0 89.362 38.8606060606061 94 10 82 0 48 141 2520 2427 Plasmodium knowlesi strain H conserved Plasmodium protein, unknown function (PKNH_1321300), partial mRNA blastn 6412 119 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium knowlesi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;