RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA312107", tax_clade = "Opisthokonta" and tax_phylum = "Rotifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 7 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 7 ✖

bioproject 1

  • PRJNA312107 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7441574 7441574 PRJNA312107_P_NODE_2426_length_447_cov_10.072864_g2260_i0 PRJNA312107 2426 447 10.072864 45.02570208 Encentrum 360660 Rotifera other_Eukaryota 665 0   NTclustered gi|124388846|gb|EF151006.1| 360661 g2260 i0 93.527 75.5973154362416 448 28 100 1 1 447 741 294 Encentrum astridae 28S ribosomal RNA gene, partial sequence blastn 33792 665 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Dicranophoridae Encentrum Encentrum astridae
14406538 14406538 PRJNA312107_P_NODE_21832_length_166_cov_0.888889_g21666_i0 PRJNA312107 21832 166 0.888889 1.47555574 Brachionus urceolaris 204736 Rotifera other_Eukaryota 198 1.69e-46   NTclustered gi|72153738|gb|DQ089740.1| 204736 g21666 i0 88.554 7.00602409638554 166 16 100 3 1 166 257 419 Brachionus urceolaris 28S ribosomal RNA gene, partial sequence blastn 1163 198 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris
16954878 16954878 PRJNA312107_P_NODE_10334_length_224_cov_6.194286_g10168_i0 PRJNA312107 10334 224 6.194286 13.87520064 Encentrum tectipes 360662 Rotifera other_Eukaryota 353 4.87e-93   NTclustered gi|83285187|gb|DQ297734.1| 360662 g10168 i0 95.089 100.647321428571 224 11 100 0 1 224 968 745 Encentrum tectipes 28S ribosomal RNA gene, partial sequence blastn 22545 353 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Dicranophoridae Encentrum Encentrum tectipes
16955008 16955008 PRJNA312107_P_NODE_4074_length_347_cov_5.335570_g3908_i0 PRJNA312107 4074 347 5.33557 18.5144279 Encentrum astridae 360661 Rotifera other_Eukaryota 623 5.549999999999999e-174   NTclustered gi|83285083|gb|DQ297695.1| 360661 g3908 i0 99.133 99.6311239193084 346 3 99 0 2 347 937 592 Encentrum astridae 18S ribosomal RNA gene, partial sequence blastn 34572 623 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Dicranophoridae Encentrum Encentrum astridae
20189698 20189698 PRJNA312107_P_NODE_15536_length_185_cov_3.095588_g15370_i0 PRJNA312107 15536 185 3.095588 5.7268378 Ploima 84394 Rotifera other_Eukaryota 337 3.89e-88   NTclustered gi|2317705897|gb|OP653727.1| 96446 g15370 i0 99.459 100 185 1 100 0 1 185 1372 1556 Lecane bulla voucher P11 small subunit ribosomal RNA gene, partial sequence blastn 18500 337 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
29947965 29947965 PRJNA312107_P_NODE_26231_length_162_cov_0.920354_g26065_i0 PRJNA312107 26231 162 0.920354 1.49097348 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 100 2.9e-25   NR CAF1099792.1 104777 g26065 i0 94.3 0.981481481481482 53 3 98.1 0 2 160 66 118 CAF1099792.1 unnamed protein product [Brachionus calyciflorus] diamond 159 100 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
31401665 31401665 PRJNA312107_P_NODE_20196_length_168_cov_0.873950_g20030_i0 PRJNA312107 20196 168 0.87395 1.468236 Brachionus plicatilis 10195 Rotifera other_Eukaryota 77.4 1.69e-15   NR RNA13468.1 10195 g20030 i0 76.7 4.76785714285714 43 10 76.8 0 39 167 190 232 RNA13468.1 hypothetical protein BpHYR1_012004 [Brachionus plicatilis] diamond 801 77.4 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;