RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA312107", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA312107 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5481136 5481136 PRJNA312107_P_NODE_5205_length_310_cov_1.716475_g5039_i0 PRJNA312107 5205 310 1.716475 5.3210725 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 255 2.06e-63   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g5039 i0 93.605 150.006451612903 172 9 55 2 140 310 1307796 1307626 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 46502 255 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
16954924 16954924 PRJNA312107_P_NODE_19374_length_168_cov_1.747899_g19208_i0 PRJNA312107 19374 168 1.747899 2.93647032 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 200 4.76e-47   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g19208 i0 88.235 636.589285714286 170 16 100 4 1 168 3830457 3830290 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 106947 200 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;