RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA312107", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA312107 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9305597 9305597 PRJNA312107_P_NODE_15648_length_185_cov_1.198529_g15482_i0 PRJNA312107 15648 185 1.198529 2.21727865 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 191 3.210000000000001e-44   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g15482 i0 88.535 386.535135135135 157 18 85 0 1 157 1594692 1594536 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 71509 191 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
26743262 26743262 PRJNA312107_P_NODE_19821_length_168_cov_0.873950_g19655_i0 PRJNA312107 19821 168 0.87395 1.468236 Bacteria 2 Bacteria Bacteria 60.1 1.03e-8   NR MBW8889021.1 2052160 g19655 i0 92.6 3.375 27 2 48.2 0 1 81 376 402 MBW8889021.1 glycosyltransferase [Fibrobacterota bacterium] diamond 567 60.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
27692339 27692339 PRJNA312107_P_NODE_24124_length_164_cov_0.904348_g23958_i0 PRJNA312107 24124 164 0.904348 1.48313072 Bacteria 2 Bacteria Bacteria 117 1.0699999999999999e-31   NR MDB5049498.1 2052160 g23958 i0 94.4 2.94512195121951 54 3 98.8 0 164 3 83 136 MDB5049498.1 Oligoribonuclease [Fibrobacterota bacterium] diamond 483 118 0.991525423728814 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
31116651 31116651 PRJNA312107_P_NODE_21335_length_166_cov_1.598291_g21169_i0 PRJNA312107 21335 166 1.598291 2.65316306 Fibrobacteria bacterium 2725311 Bacteria Bacteria 42.7 0.0134   NR MEO7777622.1 2725311 g21169 i0 43.8 0.867469879518072 48 27 86.7 0 23 166 417 464 MEO7777622.1 chitobiase/beta-hexosaminidase C-terminal domain-containing protein [Fibrobacteria bacterium] diamond 144 42.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;