RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA312107", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA312107 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12542144 12542144 PRJNA312107_P_NODE_25550_length_162_cov_0.920354_g25384_i0 PRJNA312107 25550 162 0.920354 1.49097348 Naegleria 5761 Heterolobosea other_Eukaryota 300 4.36e-77   NTclustered gi|2801876959|gb|PQ308409.1| 37103 g25384 i0 100 100 162 0 100 0 1 162 157 318 Naegleria sp. isolate N11 small subunit ribosomal RNA gene, partial sequence blastn 16200 300 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
13817021 13817021 PRJNA312107_P_NODE_15151_length_188_cov_1.079137_g14985_i0 PRJNA312107 15151 188 1.079137 2.02877756 Naegleria 5761 Heterolobosea other_Eukaryota 348 1.84e-91   NTclustered gi|2618963742|gb|OR769034.1| 5762 g14985 i0 100 9.01063829787234 188 0 100 0 1 188 5677 5490 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 1694 348 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24603593 24603593 PRJNA312107_P_NODE_12480_length_206_cov_1.560510_g12314_i0 PRJNA312107 12480 206 1.56051 3.2146506 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 375 9.41e-100   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g12314 i0 99.515 3.18932038834951 206 1 100 0 1 206 3346 3551 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 657 375 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;