RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA312107", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Peregrinibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA312107 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23329726 23329726 PRJNA312107_P_NODE_8619_length_244_cov_1.158974_g8453_i0 PRJNA312107 8619 244 1.158974 2.82789656 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 233 7.319999999999999e-57   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g8453 i0 89.785 624.069672131148 186 13 75 6 1 183 814361 814179 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 152273 233 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
24603614 24603614 PRJNA312107_P_NODE_17340_length_175_cov_1.650794_g17174_i0 PRJNA312107 17340 175 1.650794 2.8888895 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 248 1.7499999999999998e-61   NTclustered gi|2258833497|gb|CP060226.1| 2053688 g17174 i0 92.941 81.1085714285714 170 12 97 0 6 175 814959 814790 MAG: Candidatus Peribacteria bacterium isolate HK-STAS-PATE-10 chromosome, complete genome blastn 14194 248 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
32792175 32792175 PRJNA312107_P_NODE_26000_length_162_cov_0.920354_g25834_i0 PRJNA312107 26000 162 0.920354 1.49097348 Candidatus Peribacteraceae bacterium 2735830 Bacteria Bacteria 67 3.35e-11   NR MFA6039792.1 2735830 g25834 i0 60.8 0.944444444444444 51 20 94.4 0 153 1 7 57 MFA6039792.1 hypothetical protein [Candidatus Peribacteraceae bacterium] diamond 153 67 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales     Candidatus Peribacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;