RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA312107", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 4 ✖

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA312107 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2928180 2928180 PRJNA312107_P_NODE_16663_length_179_cov_1.530769_g16497_i0 PRJNA312107 16663 179 1.530769 2.74007651 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 313 6.3e-81   NTclustered gi|887029|gb|L37037.1|APSRRE 41120 g16497 i0 98.315 70.6983240223464 178 3 99 0 1 178 632 809 Apusomonas proboscidea strain CCAP 1905/1 18S ribosomal RNA gene, complete sequence blastn 12655 313 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
13131308 13131308 PRJNA312107_P_NODE_14151_length_194_cov_1.434483_g13985_i0 PRJNA312107 14151 194 1.434483 2.78289702 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 359 8.809999999999999e-95   NTclustered gi|61187360|gb|AY752987.1| 41120 g13985 i0 100 75.0360824742268 194 0 100 0 1 194 1865 1672 Apusomonas sp. CCAP1905/1 28S ribosomal RNA gene, partial sequence blastn 14557 359 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
20779086 20779086 PRJNA312107_P_NODE_17297_length_175_cov_2.904762_g17131_i0 PRJNA312107 17297 175 2.904762 5.0833335 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 291 2.8699999999999993e-74   NTclustered gi|2206682169|gb|OM966642.1| 41120 g17131 i0 96.571 2.8 175 6 100 0 1 175 5997 5823 Apusomonas proboscidea strain MPSANABRIA15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 490 291 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
24603720 24603720 PRJNA312107_P_NODE_8360_length_247_cov_3.823232_g8194_i0 PRJNA312107 8360 247 3.823232 9.44338304 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 457 4.05e-124   NTclustered gi|300078508|gb|GU001170.1| 41120 g8194 i0 100 101.028340080972 247 0 100 0 1 247 1182 936 Apusomonas proboscidea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24954 457 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;