RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA312107", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA312107 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12542148 12542148 PRJNA312107_P_NODE_5350_length_306_cov_1.599222_g5184_i0 PRJNA312107 5350 306 1.599222 4.89361932 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 294 4.29e-75   NTclustered gi|300078500|gb|GU001162.1| 136499 g5184 i0 90.541 72.9313725490196 222 21 73 0 85 306 2151 2372 Phalansterium solitarium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22317 294 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium solitarium
15680379 15680379 PRJNA312107_P_NODE_22693_length_165_cov_0.896552_g22527_i0 PRJNA312107 22693 165 0.896552 1.4793108 Entamoeba dispar 46681 Evosea other_Eukaryota 52.8 0.014   NTclustered gi|167394131|ref|XM_001740811.1| 370354 g22527 i0 94.286 0.212121212121212 35 1 21 1 126 159 605 571 Entamoeba dispar SAW760 stress 70 protein chaperone microsome-associated 60 kDa protein precursor, putative (EDI_103420), partial mRNA blastn 35 52.8 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
20779153 20779153 PRJNA312107_P_NODE_23697_length_164_cov_0.904348_g23531_i0 PRJNA312107 23697 164 0.904348 1.48313072 Didymium iridis 5793 Evosea other_Eukaryota 204 3.5699999999999997e-48   NTclustered gi|2687|emb|X60210.1| 5793 g23531 i0 90.789 2.78048780487805 152 14 93 0 3 154 2333 2484 D.iridis LSU rRNA gene blastn 456 204 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;