RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA309466" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA309466 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4204014 4204014 PRJNA309466_P_NODE_19744_length_152_cov_2.990291_g19687_i0 PRJNA309466 19744 152 2.990291 4.54524232 Saccostrea echinata 191078 Mollusca Mollusca 176 7.07e-40   NTclustered gi|2628615720|ref|XR_009719673.1| 191078 g19687 i0 93.277 77.6381578947368 119 8 78 0 27 145 3110 2992 PREDICTED: Saccostrea echinata large subunit ribosomal RNA (LOC133177405), rRNA blastn 11801 176 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea echinata
5480246 5480246 PRJNA309466_P_NODE_15305_length_169_cov_181364.866667_g15248_i0 PRJNA309466 15305 169 181364.866667 306506.62466723 Taylorina solomonensis 2891524 Mollusca Mollusca 76.8 8.37e-10   NTclustered gi|2127706952|gb|OL339378.1| 2891524 g15248 i0 97.727 26.0236686390533 44 1 26 0 41 84 2447 2404 Taylorina solomonensis voucher MNHN IM-2013-46005 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4398 76.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Lucinida Lucinidae Taylorina Taylorina solomonensis
9304874 9304874 PRJNA309466_P_NODE_3448_length_320_cov_5.560886_g3392_i0 PRJNA309466 3448 320 5.560886 17.7948352 Bradybaena similaris 145626 Mollusca Mollusca 63.9 1.39e-5   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g3392 i0 77.778 0.86875 108 21 33 2 127 233 8051560 8051665 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 278 63.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
15090943 15090943 PRJNA309466_P_NODE_9552_length_202_cov_248375.895425_g9495_i0 PRJNA309466 9552 202 248375.895425 501719.3087585 Mollusca 6447 Mollusca Mollusca 113 7.95e-21   NTclustered gi|31790025|gb|AY296874.1| 40252 g9495 i0 98.438 31.6089108910891 64 1 32 0 44 107 308 245 Trichomya hirsuta voucher C203203 28S ribosomal RNA gene, partial sequence blastn 6385 113 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Trichomya Trichomya hirsuta
19502867 19502867 PRJNA309466_P_NODE_6416_length_232_cov_23.912568_g6359_i0 PRJNA309466 6416 232 23.912568 55.47715776 Bradybaena similaris 145626 Mollusca Mollusca 108 4.37e-19   NTclustered gi|2912997258|dbj|AP039602.1| 145626 g6359 i0 78.409 48.8620689655172 176 30 75 5 4 178 53749174 53749342 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 21, sequence blastn 11336 108 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
27422110 27422110 PRJNA309466_P_NODE_17903_length_162_cov_6.699115_g17846_i0 PRJNA309466 17903 162 6.699115 10.8525663 Acanthosepion pharaonis 158019 Mollusca Mollusca 44.7 0.00223   NR CAE1281722.1 158019 g17846 i0 55.8 0.962962962962963 52 15 90.7 3 13 159 4 50 CAE1281722.1 unnamed protein product [Acanthosepion pharaonis] diamond 156 44.7 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Sepiida Sepiidae Acanthosepion Acanthosepion pharaonis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;