RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA309466" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5480336 5480336 PRJNA309466_P_NODE_6945_length_226_cov_3.457627_g6888_i0 PRJNA309466 6945 226 3.457627 7.81423702 Echinosteliopsis oligospora 1908696 Evosea other_Eukaryota 383 6.28e-102   NTclustered gi|1465309723|gb|MH809394.1| 1908696 g6888 i0 98.174 96.4513274336283 219 4 97 0 2 220 1167 1385 Echinosteliopsis oligospora isolate HH14-A2-1A small subunit ribosomal RNA gene, partial sequence blastn 21798 383 1 Eukaryota Amoebozoa   Evosea Eumycetozoa   Echinosteliopsidaceae Echinosteliopsis Echinosteliopsis oligospora
6165824 6165824 PRJNA309466_P_NODE_17125_length_164_cov_2.582609_g17068_i0 PRJNA309466 17125 164 2.582609 4.23547876 Physaraceae 1115744 Evosea other_Eukaryota 135 1.32e-27   NTclustered gi|117165490|dbj|AB259503.1| 385460 g17068 i0 83.333 91.8231707317073 150 22 91 3 16 164 388 241 Physarum crateriforme gene for small subunit ribosomal RNA, partial sequence, specimen_voucher: TNS-M-Y-17855 (TNS) blastn 15059 135 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum crateriforme
27358887 27358887 PRJNA309466_P_NODE_18843_length_158_cov_2.348624_g18786_i0 PRJNA309466 18843 158 2.348624 3.71082592 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 55.8 2.76e-7   NR KAH3766616.1 1580589 g18786 i0 51.1 0.892405063291139 47 20 89.2 1 12 152 193 236 KAH3766616.1 2-isopropylmalate synthase [Pelomyxa schiedti] diamond 141 55.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;