RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA309466" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26821249 26821249 PRJNA309466_P_NODE_13481_length_178_cov_3.705426_g13424_i0 PRJNA309466 13481 178 3.705426 6.59565828 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 49.3 7.71e-5   NR MBC7766448.1 2762014 g13424 i0 69.4 0.606741573033708 36 11 60.7 0 8 115 723 758 MBC7766448.1 ATP-dependent DNA helicase RecG [Candidatus Parcubacteria bacterium] diamond 108 49.3 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
27990338 27990338 PRJNA309466_P_NODE_19465_length_154_cov_2.352381_g19408_i0 PRJNA309466 19465 154 2.352381 3.62266674 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 43.1 0.00818   NR MEY2664238.1 2762014 g19408 i0 51.5 0.642857142857143 33 16 64.3 0 37 135 153 185 MEY2664238.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 99 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29158657 29158657 PRJNA309466_P_NODE_12189_length_185_cov_2.029412_g12132_i0 PRJNA309466 12189 185 2.029412 3.7544122 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 68.9 1e-11   NR MEN9649771.1 2762014 g12132 i0 96.2 0.859459459459459 53 2 85.9 0 161 3 2288 2340 MEN9649771.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 159 68.9 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;