RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA309466" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5480308 5480308 PRJNA309466_P_NODE_2685_length_393_cov_9.069767_g2629_i0 PRJNA309466 2685 393 9.069767 35.64418431 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 244 5.78e-60   NTclustered gi|1085196739|ref|XR_001974428.1| 508771 g2629 i0 79.339 93.6743002544529 363 63 92 9 29 389 416 768 Toxoplasma gondii ME49 28S ribosomal RNA rRNA blastn 36814 244 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
15090608 15090608 PRJNA309466_P_NODE_11312_length_190_cov_6.283688_g11255_i0 PRJNA309466 11312 190 6.283688 11.9390072 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 117 5.71e-22   NTclustered gi|2504475956|gb|OQ975294.1| 2600145 g11255 i0 90.11 45.9105263157895 91 8 47 1 14 103 4353 4263 Eleutheroschizon duboscqi isolate E2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8723 117 1 Eukaryota Sar   Apicomplexa Conoidasida Protococcidiorida Eleutheroschizonidae Eleutheroschizon Eleutheroschizon duboscqi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;