RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA309466", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA309466 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15679482 15679482 PRJNA309466_P_NODE_10373_length_197_cov_1.310811_g10316_i0 PRJNA309466 10373 197 1.310811 2.58229767 Desulfobulbus sp. 'McCal 25m' 97109 Bacteria Bacteria 104 4.64e-18   NTclustered gi|5114202|gb|AF132868.1|AF132868 97109 g10316 i0 83.051 36.4010152284264 118 16 59 4 81 197 346 232 Desulfobulbus sp. 'McCal 25m' 16S ribosomal RNA gene, partial sequence blastn 7171 104 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus sp. 'McCal 25m'
32445673 32445673 PRJNA309466_P_NODE_5019_length_257_cov_4.254808_g4962_i0 PRJNA309466 5019 257 4.254808 10.93485656 Fundidesulfovibrio soli 2922716 Bacteria Bacteria 44.7 0.00885   NR WP_243440041.1 2922716 g4962 i0 62.1 0.33852140077821 29 11 33.9 0 42 128 163 191 WP_243440041.1 acyltransferase family protein [Fundidesulfovibrio soli] diamond 87 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Fundidesulfovibrio Fundidesulfovibrio soli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;