RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA309466", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA309466 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6754493 6754493 PRJNA309466_P_NODE_18986_length_157_cov_2.703704_g18929_i0 PRJNA309466 18986 157 2.703704 4.24481528 Bryobacterales bacterium 2026791 Bacteria Bacteria 174 2.65e-39   NTclustered gi|2874253826|emb|OY969810.1| 2026791 g18929 i0 89.706 34 136 14 87 0 17 152 6658815 6658950 MAG: Bryobacterales bacterium isolate MFD04967.bin.c.1 genome assembly, chromosome: 1 blastn 5338 174 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
26979285 26979285 PRJNA309466_P_NODE_18682_length_159_cov_2.409091_g18625_i0 PRJNA309466 18682 159 2.409091 3.83045469 Acidobacteriota bacterium 1978231 Bacteria Bacteria 110 1.1500000000000002e-27   NR MBU6379814.1 1978231 g18625 i0 96.2 0.981132075471698 52 2 98.1 0 3 158 58 109 MBU6379814.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK [Acidobacteriota bacterium] diamond 156 110 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30105720 30105720 PRJNA309466_P_NODE_16972_length_165_cov_0.896552_g16915_i0 PRJNA309466 16972 165 0.896552 1.4793108 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 78.2 4.15e-15   NR HKY19571.1 2910147 g16915 i0 74 2.72727272727273 50 13 90.9 0 10 159 75 124 HKY19571.1 hypothetical protein [Vicinamibacterales bacterium] diamond 450 78.2 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;