RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA309466", tax_kingdom = "Pseudomonadati" and tax_phylum = "Abditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA309466 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2927544 2927544 PRJNA309466_P_NODE_6423_length_232_cov_3.136612_g6366_i0 PRJNA309466 6423 232 3.136612 7.27693984 Abditibacteriota bacterium 2783868 Bacteria Bacteria 372 1.3999999999999998e-98   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g6366 i0 99.51 220.146551724138 204 1 88 0 29 232 2851908 2851705 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 51074 372 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
15679489 15679489 PRJNA309466_P_NODE_11033_length_192_cov_3.573427_g10976_i0 PRJNA309466 11033 192 3.573427 6.86097984 Abditibacteriota bacterium 2783868 Bacteria Bacteria 265 1.95e-66   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g10976 i0 92.473 241.536458333333 186 12 96 2 7 191 2851876 2851692 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 46375 265 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
15679597 15679597 PRJNA309466_P_NODE_19133_length_156_cov_2.822430_g19076_i0 PRJNA309466 19133 156 2.82243 4.4029908 Abditibacteriota bacterium 2783868 Bacteria Bacteria 200 4.3399999999999996e-47   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g19076 i0 89.809 2.01282051282051 157 15 100 1 1 156 2852301 2852145 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 314 200 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;