RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA309466", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 6 ✖

tax_kingdom 1

  • Metazoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2338198 2338198 PRJNA309466_P_NODE_12522_length_183_cov_3.731343_g12465_i0 PRJNA309466 12522 183 3.731343 6.82835769 Metazoa 33208 Platyhelminthes Platyhelminthes 339 1.07e-88   NTclustered gi|60687563|gb|AY914894.1| 6182 g12465 i0 100 100 183 0 100 0 1 183 603 421 Schistosoma japonicum unknown mRNA blastn 18300 339 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
11266244 11266244 PRJNA309466_P_NODE_17109_length_164_cov_3.086957_g17052_i0 PRJNA309466 17109 164 3.086957 5.06260948 Metazoa 33208 Platyhelminthes Platyhelminthes 292 7.41e-75   NTclustered gi|60687563|gb|AY914894.1| 6182 g17052 i0 99.379 98.1707317073171 161 1 98 0 3 163 275 115 Schistosoma japonicum unknown mRNA blastn 16100 292 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
13130656 13130656 PRJNA309466_P_NODE_4291_length_278_cov_6.458515_g4235_i0 PRJNA309466 4291 278 6.458515 17.9546717 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 462 9.98e-126   NTclustered gi|109631072|gb|DQ665992.1| 79327 g4235 i0 98.12 82.1438848920863 266 1 94 4 13 274 527 792 Schmidtea mediterranea 28S ribosomal RNA gene, partial sequence blastn 22836 462 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
18228442 18228442 PRJNA309466_P_NODE_10575_length_196_cov_0.918367_g10518_i0 PRJNA309466 10575 196 0.918367 1.79999932 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 333 5.41e-87   NTclustered gi|546143622|ref|NC_022448.1| 79327 g10518 i0 97.436 2.98469387755102 195 5 99 0 1 195 6656 6850 Schmidtea mediterranea mitochondrion, complete genome blastn 585 333 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
23328906 23328906 PRJNA309466_P_NODE_8919_length_207_cov_33.791139_g8862_i0 PRJNA309466 8919 207 33.791139 69.94765773 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 368 1.5800000000000002e-97   NTclustered gi|1667392|gb|U31084.1|DMU31084 79327 g8862 i0 99.024 99.1545893719807 205 2 99 0 1 205 1643 1439 Dugesia mediterranea 18S ribosomal RNA type I gene, complete sequence blastn 20525 368 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
27042639 27042639 PRJNA309466_P_NODE_7202_length_223_cov_773416.281609_g7145_i0 PRJNA309466 7202 223 773416.281609 1724718.30798807 Paragonimus westermani 34504 Platyhelminthes Platyhelminthes 48.1 1.15e-4   NR KAA3674478.1 34504 g7145 i0 66.7 0.739910313901345 33 11 44.4 0 37 135 104 136 KAA3674478.1 histone H3 [Paragonimus westermani] diamond 165 48.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus westermani

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;