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contig_metadata

8 rows where bioproject = "PRJNA309466", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4204018 4204018 PRJNA309466_P_NODE_2964_length_365_cov_3.370253_g2908_i0 PRJNA309466 2964 365 3.370253 12.30142345 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 651 0   NTclustered gi|53693101|gb|AY742752.1| 123356 g2908 i0 99.718 96.7534246575343 355 1 97 0 9 363 1003 649 Hyaloperonospora parasitica 18S ribosomal RNA gene, partial sequence blastn 35315 651 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
11266288 11266288 PRJNA309466_P_NODE_2089_length_472_cov_9.803783_g2034_i0 PRJNA309466 2089 472 9.803783 46.273855759999996 Pseudoperonospora 143452 SAR_Eukaryotes SAR_Eukaryotes 848 0   NTclustered gi|33520221|gb|AY273966.1| 162119 g2034 i0 99.359 99.1673728813559 468 3 99 0 5 472 7 474 Pseudoperonospora urticae large subunit ribosomal RNA gene, partial sequence blastn 46807 848 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora urticae
15090631 15090631 PRJNA309466_P_NODE_12152_length_185_cov_3.000000_g12095_i0 PRJNA309466 12152 185 3 5.55 Pseudoperonospora 143452 SAR_Eukaryotes SAR_Eukaryotes 331 1.81e-86   NTclustered gi|927372602|ref|NC_027859.1| 143453 g12095 i0 99.451 99.2162162162162 182 1 98 0 4 185 3267 3086 Pseudoperonospora cubensis mitochondrion, complete genome blastn 18355 331 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora cubensis
18228568 18228568 PRJNA309466_P_NODE_6155_length_236_cov_7.647059_g6098_i0 PRJNA309466 6155 236 7.647059 18.04705924 Pseudoperonospora cubensis 143453 SAR_Eukaryotes SAR_Eukaryotes 431 2.33e-116   NTclustered gi|53693109|gb|AY742760.1| 143453 g6098 i0 99.576 100 236 1 100 0 1 236 665 900 Pseudoperonospora cubensis 18S ribosomal RNA gene, partial sequence blastn 23600 431 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora cubensis
22053355 22053355 PRJNA309466_P_NODE_18338_length_161_cov_6.580357_g18281_i0 PRJNA309466 18338 161 6.580357 10.59437477 Pseudoperonospora humuli 162120 SAR_Eukaryotes SAR_Eukaryotes 279 5.64e-71   NTclustered gi|145242870|gb|AY035497.2| 162120 g18281 i0 98.125 99.3913043478261 160 3 99 0 2 161 202 43 Pseudoperonospora humuli isolate HV 129 large subunit ribosomal RNA gene, partial sequence blastn 16002 279 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora humuli
22053381 22053381 PRJNA309466_P_NODE_4578_length_269_cov_2.881818_g4522_i0 PRJNA309466 4578 269 2.881818 7.75209042 Hyaloperonospora arabidopsidis 272952 SAR_Eukaryotes SAR_Eukaryotes 462 9.61e-126   NTclustered gi|2248512796|ref|NC_063789.1| 272952 g4522 i0 98.842 97.2565055762082 259 3 96 0 5 263 2025 2283 Hyaloperonospora arabidopsidis isolate Noks1 mitochondrion, complete genome blastn 26162 462 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora arabidopsidis
30737625 30737625 PRJNA309466_P_NODE_16674_length_166_cov_0.888889_g16617_i0 PRJNA309466 16674 166 0.888889 1.47555574 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 85.9 8.13e-18   NR KAF4038961.1 4787 g16617 i0 74.1 3.90361445783133 54 14 97.6 0 2 163 74 127 KAF4038961.1 hypothetical protein GN244_ATG08951 [Phytophthora infestans] diamond 648 85.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
31274912 31274912 PRJNA309466_P_NODE_17595_length_163_cov_1.657895_g17538_i0 PRJNA309466 17595 163 1.657895 2.70236885 Phytophthora fragariaefolia 1490495 SAR_Eukaryotes SAR_Eukaryotes 48.1 1.53e-4   NR GMF39275.1 1490495 g17538 i0 71.4 2.30061349693252 35 10 64.4 0 9 113 192 226 GMF39275.1 unnamed protein product [Phytophthora fragariaefolia] diamond 375 48.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariaefolia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;