RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA309466", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA309466 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8030104 8030104 PRJNA309466_P_NODE_8067_length_215_cov_1.674699_g8010_i0 PRJNA309466 8067 215 1.674699 3.60060285 uncultured diatom 137771 SAR_Eukaryotes SAR_Eukaryotes 383 5.92e-102   NTclustered gi|831437087|gb|KR089947.1| 137771 g8010 i0 99.061 96.6 213 2 99 0 2 214 259 47 Uncultured diatom clone 113370_JV_PG11_8_D4 18S ribosomal RNA gene, partial sequence blastn 20769 383 1 Eukaryota Sar   Bacillariophyta         uncultured diatom
11266261 11266261 PRJNA309466_P_NODE_17989_length_162_cov_1.946903_g17932_i0 PRJNA309466 17989 162 1.946903 3.15398286 root 1 Root_unresolved Root_unresolved 276 7.350000000000001e-70   NTclustered gi|1803023461|gb|MN937452.1| 2850 g17932 i0 98.101 114.407407407407 158 3 99 0 1 158 69251 69408 Phaeodactylum tricornutum strain ICE-H chloroplast, complete genome blastn 18534 276 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
15090603 15090603 PRJNA309466_P_NODE_11172_length_191_cov_6.302817_g11115_i0 PRJNA309466 11172 191 6.302817 12.03838047 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 259 9.02e-65   NTclustered gi|146762526|gb|EF553458.1| 2850 g11115 i0 92.021 90.3246073298429 188 9 96 4 7 190 4099 4284 Phaeodactylum tricornutum strain CCAP 1055/1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17252 261 0.992337164750958 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
15679591 15679591 PRJNA309466_P_NODE_18593_length_159_cov_13.800000_g18536_i0 PRJNA309466 18593 159 13.8 21.942 Asterionella formosa 210441 SAR_Eukaryotes SAR_Eukaryotes 252 1.21e-62   NTclustered gi|2497507841|gb|OQ694381.1| 210441 g18536 i0 99.281 173.270440251572 139 1 91 0 5 143 69729 69867 Asterionella formosa chloroplast, complete genome blastn 27550 252 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Asterionella Asterionella formosa
18914463 18914463 PRJNA309466_P_NODE_2835_length_377_cov_7.905488_g2779_i0 PRJNA309466 2835 377 7.905488 29.80368976 Fragilariophyceae 33853 SAR_Eukaryotes SAR_Eukaryotes 375 1.88e-99   NTclustered gi|18698484|gb|AF417685.1| 186020 g2779 i0 91.103 69.5809018567639 281 20 74 5 55 333 366 89 Synedropsis hyperboreoides strain 5-15 large subunit ribosomal RNA gene, partial sequence blastn 26232 375 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Synedropsis Synedropsis hyperboreoides
28905663 28905663 PRJNA309466_P_NODE_14168_length_175_cov_1.515873_g14111_i0 PRJNA309466 14168 175 1.515873 2.65277775 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 65.5 1.45e-10   NR KAI2507182.1 210448 g14111 i0 62.5 0.96 56 20 96 1 169 2 1521 1575 KAI2507182.1 Reverse transcriptase (RNA-dependent DNA polymerase) [Fragilaria crotonensis] diamond 168 65.5 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
30485046 30485046 PRJNA309466_P_NODE_14313_length_174_cov_2.816000_g14256_i0 PRJNA309466 14313 174 2.816 4.89984 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 47.8 2.49e-4   NR CAB9521594.1 568900 g14256 i0 41.7 0.827586206896552 48 28 82.8 0 30 173 191 238 CAB9521594.1 Reverse transcriptase (RNA-dependent DNA polymerase) (Partial), partial [Seminavis robusta] diamond 144 47.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;