RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA309466", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA309466 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11266235 11266235 PRJNA309466_P_NODE_16769_length_165_cov_3.258621_g16712_i0 PRJNA309466 16769 165 3.258621 5.37672465 Fungi 4751 Fungi Fungi 292 7.47e-75   NTclustered gi|1402384622|gb|MH483598.1| 64518 g16712 i0 99.379 95.9757575757576 161 1 98 0 1 161 278 438 Mortierella alpina isolate CK595 large subunit ribosomal RNA gene, partial sequence blastn 15836 292 1 Eukaryota Opisthokonta Fungi Mucoromycota Mortierellomycetes Mortierellales Mortierellaceae Mortierella Mortierella alpina
22739744 22739744 PRJNA309466_P_NODE_11958_length_186_cov_4.262774_g11901_i0 PRJNA309466 11958 186 4.262774 7.92875964 Mortierella 4855 Fungi Fungi 331 1.82e-86   NTclustered gi|1402384622|gb|MH483598.1| 64518 g11901 i0 98.919 94.1451612903226 185 1 99 1 1 185 41 224 Mortierella alpina isolate CK595 large subunit ribosomal RNA gene, partial sequence blastn 17511 331 1 Eukaryota Opisthokonta Fungi Mucoromycota Mortierellomycetes Mortierellales Mortierellaceae Mortierella Mortierella alpina

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;