RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA309466", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA309466 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7441132 7441132 PRJNA309466_P_NODE_6966_length_226_cov_1.734463_g6909_i0 PRJNA309466 6966 226 1.734463 3.91988638 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 136 3.56e-36   NR GAB0174460.1 2044595 g6909 i0 91.7 2.86725663716814 72 6 95.6 0 11 226 380 451 GAB0174460.1 MAG: F0F1 ATP synthase subunit beta [Candidatus Altimarinota bacterium] diamond 648 136 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
26853000 26853000 PRJNA309466_P_NODE_8581_length_210_cov_3.801242_g8524_i0 PRJNA309466 8581 210 3.801242 7.9826082 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 47.4 5.91e-4   NR NRH21421.1 2044595 g8524 i0 82.8 0.828571428571429 29 5 41.4 0 195 109 135 163 NRH21421.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 174 47.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30895881 30895881 PRJNA309466_P_NODE_8594_length_210_cov_2.521739_g8537_i0 PRJNA309466 8594 210 2.521739 5.2956519 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 55.8 2.37e-7   NR MBC7504097.1 2044595 g8537 i0 63.6 1.32857142857143 44 16 62.9 0 75 206 147 190 MBC7504097.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 279 55.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
32192394 32192394 PRJNA309466_P_NODE_17018_length_165_cov_0.896552_g16961_i0 PRJNA309466 17018 165 0.896552 1.4793108 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 44.7 0.0027   NR MBP7823327.1 2044595 g16961 i0 60 0.727272727272727 40 15 70.9 1 122 6 29 68 MBP7823327.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 120 44.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;