RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA306153" and tax_phylum = "Perkinsozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA306153 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32463149 32463149 PRJNA306153_S_NODE_2179_length_169_cov_3.914286_g2166_i0 PRJNA306153 2179 169 3.914286 6.61514334 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 90.9 5.0300000000000005e-22   NR KAF4747601.1 32597 g2166 i0 84.6 28.6686390532544 52 8 92.3 0 1 156 13 64 KAF4747601.1 40S ribosomal protein S17 [Perkinsus olseni] diamond 4845 90.9 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
32589659 32589659 PRJNA306153_S_NODE_2359_length_162_cov_4.225564_g2346_i0 PRJNA306153 2359 162 4.225564 6.84541368 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 83.2 2.01e-17   NR KAF4686433.1 32597 g2346 i0 77.4 4.90740740740741 53 12 98.1 0 2 160 119 171 KAF4686433.1 40S ribosomal protein S6 [Perkinsus olseni] diamond 795 83.2 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;