RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA306153", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA306153 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11855019 11855019 PRJNA306153_S_NODE_370_length_365_cov_21.372024_g357_i0 PRJNA306153 370 365 21.372024 78.0078876 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 625 1.6299999999999995e-174   NTclustered gi|820695469|tpe|LN714488.1| 572307 g357 i0 97.534 76.1013698630137 365 9 100 0 1 365 116695 116331 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 27777 625 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
14405355 14405355 PRJNA306153_S_NODE_372_length_365_cov_7.369048_g359_i0 PRJNA306153 372 365 7.369048 26.8970252 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 636 7.519999999999998e-178   NTclustered gi|820695469|tpe|LN714488.1| 572307 g359 i0 98.082 5.20821917808219 365 7 100 0 1 365 117252 117616 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 1901 636 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
18228055 18228055 PRJNA306153_S_NODE_735_length_277_cov_5.419355_g722_i0 PRJNA306153 735 277 5.419355 15.01161335 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 479 9.86e-131   NTclustered gi|820695469|tpe|LN714488.1| 572307 g722 i0 97.834 5.36823104693141 277 6 100 0 1 277 157360 157636 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 1487 479 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;